Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g1092 Acco11g1384 . . . Adu05g00227 . Aed11g1041 . Aev05g0241 . Ahy15g0220 . Aip05g00205 . Alju09g1383 . . . Apr7g1855 . Arst5g00276 . Bach4g00898 . Bisa11g2009 . Bva08g01045 Bva11g01363 . . Cca06g01094 . Dere09g1276 . Dod02g0255 . Enph13g1584 . Glsi05g1126 . Gma01g01547 Gma09g02001 . . Gso1g1282 Gso1g1282 . . Lal15g0343 . . . . Lal23g1160 Lan18g0829 . . . . Lan18g0829 Lapu2g00943 . Lasa2g03654 . Lele49g0840 Lele50g0875 Lele51g0858 Lele52g0859 . . . . Lja2g0723 . Mal6g0555 . Mepo5g01233 . Mesa17g01320 . Mibi12g1170 . Mtr5g1102 . Phac2g02024 . Phco4g00670 . Prci10g1353 . Psa2g3248 . Pste1g00064 . . Pte12g00605 . . . . Pvu2g1304 . . . . . Spst2g01117 . Ssu2g2072 . . . Tpr2g1352 . Trre9g01607 . Tsu05g01096 . . . . . Vimu7g03309 . . . Vivi2g02585 . . .
Vvi2g1093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g1094 . . . . Adu05g00229 . Aed11g1043 . Aev05g0242 . Ahy15g0222 . Aip05g00207 . . . . . Apr7g1856 . Arst5g00278 . Bach4g00897 . . . Bva08g01044 Bva11g01364 . . Cca06g01096 . . . Dod02g0256 . . . . . Gma01g01548 . . . Gso1g1283 . . . . . . . . Lal23g1161 . . . . . . Lapu2g00944 . Lasa2g03652 . . . . . . . . . Lja2g0722 . Mal6g0554 . Mepo5g01232 . Mesa17g01319 . . . Mtr5g1101 . Phac2g02023 . Phco4g00671 . . . Psa2g3250 . Pste1g00059 . . . . . Pumo8g01550 . Pvu2g1303 . Rops1g01362 . Seca10g01197 . Spst2g01116 . Ssu2g2073 . . . Tpr2g1351 . Trre9g01606 . Tsu05g01095 . Vian10g00974 . Vifa1g06086 . Vimu7g03307 . Viun2g01611 . Vivi2g02586 . . .
Vvi2g1095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g1096 . . . . Adu05g00230 . Aed11g1044 . Aev05g0243 . . . Aip05g00208 . . . . . . . . . Bach4g00896 . . . Bva08g01043 Bva11g01365 . . Cca06g01097 . . . Dod02g0257 . . . . . Gma01g01549 Gma09g02002 . . . . . . . . . . . . . . . . . . Lapu2g00945 . Lasa2g03651 . . . . . . . . . Lja2g0721 . . . . . . . . . . . Phac2g02010 . Phco4g00672 . . . Psa2g3251 . . . . . . . Pumo8g01551 . Pvu2g1292 . . . Seca10g01196 . Spst2g01115 . Ssu2g2074 . Sto6g4100 . . . . . . . Vian10g00973 . . . Vimu7g03306 . . . . . . .
Vvi2g1097 . . . . . . Aed11g1046 . Aev05g0244 . Ahy15g0224 . Aip05g00210 . . . . . Apr7g1858 . . . . . . . Bva08g01041 Bva11g01366 . . Cca06g01098 . . . . . . . . . Gma01g01550 Gma11g00872 . . Gso1g1284 Gso1g1284 . . Lal15g0342 . . . . . Lan18g0830 . . . . . . . . . . . . . . . . . Lja2g0719 . Mal6g0550 . . . . . . . Mtr5g1099 . . . . . . . Psa2g3253 . . . . . . . . . . . . . . . . . Ssu2g2076 . Sto6g4099 . Tpr2g1348 . . . Tsu05g01087 . . . . . . . . . . . . .
Vvi2g1098 . Acco12g0407 . Accr10g01601 . . . . . . . . . . . Alju12g1687 . . . Apr3g0475 . Arst1g01238 . . . . Bva08g01040 Bva11g01367 . . . . . . . . . . . Glsi09g0789 . . . . . . . . . . . . Lal16g1789 . . . . . . . . Lapu3g02118 . Lasa4g01968 . . . . . . . . . Lja4g2996 . Mal5g3166 . Mepo1g02313 . . . Mibi10g1607 . Mtr8g2257 . . . Phco8g00252 . Prci5g2053 . Psa4g2550 . Pste7g00523 . . . Pte12g00603 . . . Pvu3g2849 . . . . . Spst3g03634 . . . Sto11g1342 . Tpr4g4440 . Trre15g02430 . Tsu04g02762 . . . . . Vimu11g00974 . . . . . .
Vvi2g1099 Acco11g1386 . . . . . Aed11g1047 . Aev05g0246 . . . Aip05g00211 . Alju09g1387 . . . Apr7g1859 . . . Bach4g00892 . Bisa11g2006 . Bva08g01039 Bva11g01369 . . Cca06g01099 . Dere09g1273 . . . Enph13g1582 . Glsi05g1130 . Gma01g01551 Gma09g02006 . . Gso1g1285 Gso1g1285 . . . . . . . . . . . . . . Lapu2g00948 . Lasa2g03648 . Lele49g0837 Lele50g0871 Lele51g0855 Lele52g0856 . . . . Lja2g0718 . Mal6g0548 . Mepo5g01222 . Mesa17g01300 . Mibi12g1172 . Mtr5g1091 . Phac2g02003 . Phco4g00676 . Prci10g1351 . Psa2g3254 . Pste1g00036 . . . . . Pumo8g01553 . Pvu2g1289 . Rops1g01365 . Seca10g01193 . Spst2g01112 . Ssu2g2077 . Sto6g4098 . Tpr2g1347 . Trre9g01601 . Tsu05g01086 . Vian10g00971 . Vifa1g06094 . Vimu7g03296 . Viun2g01615 . Vivi2g02590 . . .
Vvi2g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g1092 Chr2 17222146 17235545 -
Acco Acco11g1384 Chr11 28161166 28162758 -
Adu Adu05g00227 Chr05 2406766 2409701 -
Aed Aed11g1041 Chr11 16212798 16216074 -
Aev Aev05g0241 Chr05 1778807 1780226 -
Ahy Ahy15g0220 Chr15 2529761 2532829 -
Aip Aip05g00205 Chr05 2224011 2227394 -
Alju Alju09g1383 Chr09 37717423 37719069 -
Apr Apr7g1855 Chr7 25849154 25852350 -
Arst Arst5g00276 Chr5 2426492 2429395 -
Bach Bach4g00898 Chr4 6007575 6009439 +
Bisa Bisa11g2009 Chr11 42921771 42923783 +
Bva Bva08g01045 Chr08 5340802 5343349 +
Bva Bva11g01363 Chr11 13694933 13697379 -
Cca Cca06g01094 Chr06 25027438 25031517 -
Dere Dere09g1276 Chr09 16703903 16705878 +
Dod Dod02g0255 Chr02 3408497 3411566 -
Enph Enph13g1584 Chr13 21466716 21469691 +
Glsi Glsi05g1126 Chr05 60989890 60991578 -
Gma Gma01g01547 Chr01 50983051 50985916 -
Gma Gma09g02001 Chr09 45634565 45636958 -
Gso Gso1g1282 Chr1 49265300 49268151 -
Gso Gso1g1282 Chr1 49265300 49268151 -
Lal Lal15g0343 Chr15 2325047 2327158 +
Lal Lal23g1160 Chr23 13030575 13033013 -
Lan Lan18g0829 Chr18 13656923 13658734 -
Lan Lan18g0829 Chr18 13656923 13658734 -
Lapu Lapu2g00943 Chr2 8758052 8761218 -
Lasa Lasa2g03654 Chr2 546397388 546400591 +
Lele Lele49g0840 Chr49 5207028 5208527 +
Lele Lele50g0875 Chr50 5518084 5519653 +
Lele Lele51g0858 Chr51 5267819 5270338 +
Lele Lele52g0859 Chr52 5563360 5564953 +
Lja Lja2g0723 Chr2 6574668 6577705 +
Mal Mal6g0555 Chr6 7368535 7371088 +
Mepo Mepo5g01233 Chr5 12523435 12526488 +
Mesa Mesa17g01320 Chr17 17195866 17198122 +
Mibi Mibi12g1170 Chr12 26986264 26987785 -
Mtr Mtr5g1102 Chr5 10951369 10954256 +
Phac Phac2g02024 Chr2 22177656 22181100 +
Phco Phco4g00670 Chr4 5068340 5070390 -
Prci Prci10g1353 Chr10 9029913 9032554 +
Psa Psa2g3248 Chr2 369084686 369089459 -
Pste Pste1g00064 Chr1 296679 300738 +
Pte Pte12g00605 Chr12 5489678 5491021 +
Pvu Pvu2g1304 Chr2 25505057 25508481 +
Spst Spst2g01117 Chr2 9812749 9814584 +
Ssu Ssu2g2072 Chr2 75574284 75578157 -
Tpr Tpr2g1352 Chr2 15791392 15794574 +
Trre Trre9g01607 Chr9 14051586 14053703 +
Tsu Tsu05g01096 Chr05 9566895 9570095 +
Vimu Vimu7g03309 Chr7 28034726 28036366 +
Vivi Vivi2g02585 Chr2 117072999 117077310 -
Vvi Vvi2g1093 Chr2 17274602 17293742 +
Vvi Vvi2g1094 Chr2 17306235 17308852 +
Adu Adu05g00229 Chr05 2416247 2418227 +
Aed Aed11g1043 Chr11 16217001 16219554 +
Aev Aev05g0242 Chr05 1782483 1784195 +
Ahy Ahy15g0222 Chr15 2539088 2541542 +
Aip Aip05g00207 Chr05 2232694 2236180 +
Apr Apr7g1856 Chr7 25856328 25858814 +
Arst Arst5g00278 Chr5 2435664 2437959 +
Bach Bach4g00897 Chr4 6002970 6005053 -
Bva Bva08g01044 Chr08 5337659 5340324 -
Bva Bva11g01364 Chr11 13697871 13700271 +
Cca Cca06g01096 Chr06 25048020 25049709 +
Dod Dod02g0256 Chr02 3435281 3437749 +
Gma Gma01g01548 Chr01 50991109 50993492 +
Gso Gso1g1283 Chr1 49273267 49275688 +
Lal Lal23g1161 Chr23 13035139 13037365 +
Lapu Lapu2g00944 Chr2 8764164 8766543 +
Lasa Lasa2g03652 Chr2 546034998 546037562 -
Lja Lja2g0722 Chr2 6564293 6566760 -
Mal Mal6g0554 Chr6 7360549 7362670 -
Mepo Mepo5g01232 Chr5 12505342 12508284 -
Mesa Mesa17g01319 Chr17 17190969 17193170 -
Mtr Mtr5g1101 Chr5 10946271 10948982 -
Phac Phac2g02023 Chr2 22167868 22170813 -
Phco Phco4g00671 Chr4 5077017 5078923 +
Psa Psa2g3250 Chr2 369259880 369264869 +
Pste Pste1g00059 Chr1 271565 274403 -
Pumo Pumo8g01550 Chr8 50428874 50431446 +
Pvu Pvu2g1303 Chr2 25499544 25501897 -
Rops Rops1g01362 Chr1 30356371 30358393 +
Seca Seca10g01197 Chr10 11738289 11741157 -
Spst Spst2g01116 Chr2 9795778 9797728 -
Ssu Ssu2g2073 Chr2 75591136 75593184 +
Tpr Tpr2g1351 Chr2 15783318 15786013 -
Trre Trre9g01606 Chr9 14045968 14047835 -
Tsu Tsu05g01095 Chr05 9557987 9560236 -
Vian Vian10g00974 Chr10 10554433 10556353 -
Vifa Vifa1g06086 Chr1 951433187 951436959 +
Vimu Vimu7g03307 Chr7 28024280 28026166 -
Viun Viun2g01611 Chr2 25951896 25954261 +
Vivi Vivi2g02586 Chr2 117118025 117122151 +
Vvi Vvi2g1095 Chr2 17315634 17315882 -
Vvi Vvi2g1096 Chr2 17315945 17324552 -
Adu Adu05g00230 Chr05 2418639 2421260 -
Aed Aed11g1044 Chr11 16217823 16221865 -
Aev Aev05g0243 Chr05 1785493 1787314 -
Aip Aip05g00208 Chr05 2235965 2238555 -
Bach Bach4g00896 Chr4 5998142 6000245 +
Bva Bva08g01043 Chr08 5334438 5336471 +
Bva Bva11g01365 Chr11 13700970 13702558 -
Cca Cca06g01097 Chr06 25051601 25055117 -
Dod Dod02g0257 Chr02 3439744 3443100 -
Gma Gma01g01549 Chr01 50997906 51001610 -
Gma Gma09g02002 Chr09 45640227 45642895 -
Lapu Lapu2g00945 Chr2 8768882 8771723 -
Lasa Lasa2g03651 Chr2 546031001 546032900 +
Lja Lja2g0721 Chr2 6559150 6562262 +
Phac Phac2g02010 Chr2 22039224 22042816 +
Phco Phco4g00672 Chr4 5080682 5083404 -
Psa Psa2g3251 Chr2 369266089 369270211 -
Pumo Pumo8g01551 Chr8 50433292 50435370 -
Pvu Pvu2g1292 Chr2 25169232 25172691 +
Seca Seca10g01196 Chr10 11732759 11736922 +
Spst Spst2g01115 Chr2 9790234 9792710 +
Ssu Ssu2g2074 Chr2 75596809 75599972 -
Sto Sto6g4100 Chr6 44555435 44557259 +
Vian Vian10g00973 Chr10 10548139 10550232 +
Vimu Vimu7g03306 Chr7 28019151 28021263 +
Vvi Vvi2g1097 Chr2 17334745 17380288 +
Aed Aed11g1046 Chr11 16227059 16236473 +
Aev Aev05g0244 Chr05 1794055 1801303 +
Ahy Ahy15g0224 Chr15 2549496 2558461 +
Aip Aip05g00210 Chr05 2252774 2264285 +
Apr Apr7g1858 Chr7 25872471 25881851 +
Bva Bva08g01041 Chr08 5317889 5326864 -
Bva Bva11g01366 Chr11 13706117 13715052 +
Cca Cca06g01098 Chr06 25058932 25074898 +
Gma Gma01g01550 Chr01 51006197 51017205 +
Gma Gma11g00872 Chr11 7321180 7324295 -
Gso Gso1g1284 Chr1 49288184 49297870 +
Gso Gso1g1284 Chr1 49288184 49297870 +
Lal Lal15g0342 Chr15 2306526 2323513 -
Lan Lan18g0830 Chr18 13661544 13674198 +
Lja Lja2g0719 Chr2 6542649 6554047 -
Mal Mal6g0550 Chr6 7293083 7301906 -
Mtr Mtr5g1099 Chr5 10921925 10932243 -
Psa Psa2g3253 Chr2 369463009 369473356 +
Ssu Ssu2g2076 Chr2 75625937 75637211 +
Sto Sto6g4099 Chr6 44541022 44550626 -
Tpr Tpr2g1348 Chr2 15741677 15751691 -
Tsu Tsu05g01087 Chr05 9510725 9520337 -
Vvi Vvi2g1098 Chr2 17382961 17393010 -
Acco Acco12g0407 Chr12 3542227 3546260 +
Accr Accr10g01601 Chr10 39918794 39922622 -
Alju Alju12g1687 Chr12 38048329 38052155 -
Apr Apr3g0475 Chr3 9861510 9869654 +
Arst Arst1g01238 Chr1 12310930 12313877 +
Bva Bva08g01040 Chr08 5313478 5316779 +
Bva Bva11g01367 Chr11 13716109 13717070 -
Glsi Glsi09g0789 Chr09 5433524 5437591 +
Lal Lal16g1789 Chr16 17008584 17013499 +
Lapu Lapu3g02118 Chr3 41095724 41103526 +
Lasa Lasa4g01968 Chr4 400130281 400135324 +
Lja Lja4g2996 Chr4 54989732 54990857 -
Mal Mal5g3166 Chr5 92523847 92526975 -
Mepo Mepo1g02313 Chr1 23874323 23878229 +
Mibi Mibi10g1607 Chr10 37138567 37142072 -
Mtr Mtr8g2257 Chr8 32755719 32760107 -
Phco Phco8g00252 Chr8 2345444 2351409 +
Prci Prci5g2053 Chr5 38052500 38057951 -
Psa Psa4g2550 Chr4 204789566 204793621 +
Pste Pste7g00523 Chr7 4841156 4847379 -
Pte Pte12g00603 Chr12 5459688 5465458 +
Pvu Pvu3g2849 Chr3 50236803 50242396 -
Spst Spst3g03634 Chr3 86376427 86381642 +
Sto Sto11g1342 Chr11 12971487 12985242 +
Tpr Tpr4g4440 Chr4 52084928 52088771 +
Trre Trre15g02430 Chr15 20184621 20188201 -
Tsu Tsu04g02762 Chr04 32103298 32107001 +
Vimu Vimu11g00974 Chr11 10084719 10090676 -
Vvi Vvi2g1099 Chr2 17393861 17407002 -
Acco Acco11g1386 Chr11 28183542 28189051 +
Aed Aed11g1047 Chr11 16237170 16241684 +
Aev Aev05g0246 Chr05 1815902 1821920 +
Aip Aip05g00211 Chr05 2269367 2273343 +
Alju Alju09g1387 Chr09 37748262 37754136 +
Apr Apr7g1859 Chr7 25882999 25888016 +
Bach Bach4g00892 Chr4 5972632 5976034 -
Bisa Bisa11g2006 Chr11 42869893 42880978 -
Bva Bva08g01039 Chr08 5307753 5311160 -
Bva Bva11g01369 Chr11 13719844 13722832 +
Cca Cca06g01099 Chr06 25074945 25083641 +
Dere Dere09g1273 Chr09 16669843 16674530 -
Enph Enph13g1582 Chr13 21440166 21446155 -
Glsi Glsi05g1130 Chr05 61014468 61020166 +
Gma Gma01g01551 Chr01 51022086 51025929 +
Gma Gma09g02006 Chr09 45672899 45677473 +
Gso Gso1g1285 Chr1 49301098 49305630 +
Gso Gso1g1285 Chr1 49301098 49305630 +
Lapu Lapu2g00948 Chr2 8796221 8803124 +
Lasa Lasa2g03648 Chr2 545966264 545970495 -
Lele Lele49g0837 Chr49 5182997 5187218 -
Lele Lele50g0871 Chr50 5488538 5492723 -
Lele Lele51g0855 Chr51 5244195 5249479 -
Lele Lele52g0856 Chr52 5536824 5541004 -
Lja Lja2g0718 Chr2 6537842 6541638 -
Mal Mal6g0548 Chr6 7279774 7284269 -
Mepo Mepo5g01222 Chr5 12393242 12398342 -
Mesa Mesa17g01300 Chr17 16921575 16926129 -
Mibi Mibi12g1172 Chr12 27016632 27020842 +
Mtr Mtr5g1091 Chr5 10877788 10883289 -
Phac Phac2g02003 Chr2 21996478 22001934 -
Phco Phco4g00676 Chr4 5109741 5114125 +
Prci Prci10g1351 Chr10 8995012 9000231 -
Psa Psa2g3254 Chr2 369597204 369603520 +
Pste Pste1g00036 Chr1 203940 208623 -
Pumo Pumo8g01553 Chr8 50459476 50464062 +
Pvu Pvu2g1289 Chr2 25119600 25124375 -
Rops Rops1g01365 Chr1 30398229 30402941 +
Seca Seca10g01193 Chr10 11695164 11699926 -
Spst Spst2g01112 Chr2 9760185 9764513 -
Ssu Ssu2g2077 Chr2 75642973 75647460 +
Sto Sto6g4098 Chr6 44534020 44539386 -
Tpr Tpr2g1347 Chr2 15733270 15737510 -
Trre Trre9g01601 Chr9 13992442 13996257 -
Tsu Tsu05g01086 Chr05 9501516 9505862 -
Vian Vian10g00971 Chr10 10504962 10509138 -
Vifa Vifa1g06094 Chr1 952824952 952834778 +
Vimu Vimu7g03296 Chr7 27961126 27965347 -
Viun Viun2g01615 Chr2 25979644 25984009 +
Vivi Vivi2g02590 Chr2 117286782 117291250 +
Vvi Vvi2g1100 Chr2 17415540 17415758 +
Vvi Vvi2g1101 Chr2 17430558 17431895 -
Gma Gma11g00872 Chr11 7321180 7324295 -