Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00974 ATGGCATTGTTGCTACAAACTCGTTACGCTCTCTCTGTATGTTCACCGCGTTACCCTTATCACTTCCCAAATCCTTATTATCATAATCCCTTTCTCATAATCCCCGCCACATCCACCAAATCCCTATCCTCATTCCATGCATCACCAATTGCATTCTCCGCTCACCCAACTCCCTCACGCGGTTCGCCGCCCTCACCCACTGCCTCCGCTTTCCACCGCGAGTCACCTCCACAAACGCCACCTATCAAAGCTGTGGCAGGCCTCGCCGCCTCCGCCGTGCTTTTTCTCTGCATCGGCGTTCGCTTGTGTTTGGCCTCTTCGCCGCCGTCGCCCCTACCTGCCGGTCCTCCCGTCGTTCAAGAGGACCAAACTGTTCAAGATGATCATGATGGAAGAAAACAAGATGACAAAGACACTGTAGTAGATAAAGAATTAGAAGAAGCTTTTAATACCTGGAAATCTAAATCATTTGCATTGACTGTTCCCCTGAAAGTTGTTGCTCTACGTGGTTCTATACCTCCTTCATGGATCAAGGACTTTATAAATTGTCAAGGGAGGAGAATGAAGTTTAACGTGAAGTATTATGCAAGTCTTGAGAGCATCTTTTCTGACCTAACAGTTCCCTTTACTAAAGGAAAAATTGGTCCAGCATCTGCTTTGGCAGCAGATATTGTTGGTATTGGCGATTCATGGCTCAAATATGCTATTAAGCAAGCTATAATTGAGCCAATAAGAGATGTAGAAGATCAGGAGTGGTTTAAAAGCTTAAATGACAAGTGGAAGGTATACCTACGCAGGAACTCTGAGGGAGAAATAGATCCTAAAGGTGATACATGGGCTGCTCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAAATTTCAAGAGCATAAGTTGGCTCCTGTAGAGGACTGGTCGGATCTTTGGCGGCCTGATCTAGCTGGAAGGATTTCAATGGTTGATTCTCCTAGAGAAGTTGTTGGTGCAGTTTTGAAGTATATGGGGACTTCCTACAATACAATTGACATCAATGCTGAAGTCAATGGTGGGAGAGACGCTGTTAAACATAATTTGGCTTTGCTCGCAAAACAGGTTCGACTTTTTGATAGTTCAAACTATCTAAAAGCTTTTGGAGTTGGAGACGTGTGGGTAGCTGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAACGCCTGTCTAATGTTGCTGTTGTTGTTCCAAAGTCTGGAGCGAGCTTATGGGCAGATCTTTGGGCAATTCCGGCTGCATCTAGGATTGAAACAAGTCGGATTGGTGGACGTGTGAGAGGGCCGTCACCATTAATCCATCAGTGGATCGAGTTTTGTCTGCAATCTGCCAGAGCTCTCCCCTTTAAGCAAGAGGTGATCCCAGGTGCCTCTCCCTCAAATCTTCAAAGTCATTCGGCCAATGTGCCCATCGAGTTAACCAATGGTAGACCAAAGCTAAAGGGTAACCTAGTTGATGGAGCACCTCCACCAGACATCTTAGAAAGGTGTGAGTTTCTAGAGCCATTATCTAATTCGACATTGTCAGATTACCATTGGTTGATTACCTCCATCCACGAACCTAGCCATGGATTGATACACAAAATGTATCATAATATCATATCACTGACCAAATTTTCTGGGTGGTTTAATTCAAAACTTACTTGA 1683 0.4474 MALLLQTRYALSVCSPRYPYHFPNPYYHNPFLIIPATSTKSLSSFHASPIAFSAHPTPSRGSPPSPTASAFHRESPPQTPPIKAVAGLAASAVLFLCIGVRLCLASSPPSPLPAGPPVVQEDQTVQDDHDGRKQDDKDTVVDKELEEAFNTWKSKSFALTVPLKVVALRGSIPPSWIKDFINCQGRRMKFNVKYYASLESIFSDLTVPFTKGKIGPASALAADIVGIGDSWLKYAIKQAIIEPIRDVEDQEWFKSLNDKWKVYLRRNSEGEIDPKGDTWAAPYRWGCMVIAYKTNKFQEHKLAPVEDWSDLWRPDLAGRISMVDSPREVVGAVLKYMGTSYNTIDINAEVNGGRDAVKHNLALLAKQVRLFDSSNYLKAFGVGDVWVAVGWSSDIIPAAKRLSNVAVVVPKSGASLWADLWAIPAASRIETSRIGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPSNLQSHSANVPIELTNGRPKLKGNLVDGAPPPDILERCEFLEPLSNSTLSDYHWLITSIHEPSHGLIHKMYHNIISLTKFSGWFNSKLT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00974 560 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 324 343 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vimu11g00974 560 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 306 320 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vimu11g00974 560 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 410 429 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vimu11g00974 560 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 277 293 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vimu11g00974 560 MobiDBLite consensus disorder prediction 53 79 - -
Vimu11g00974 560 CDD PBP2_PotD_PotF_like_1 162 528 - -
Vimu11g00974 560 SUPERFAMILY Periplasmic binding protein-like II 163 428 - -
Vimu11g00974 560 Gene3D - 286 437 - -
Vimu11g00974 560 Pfam Bacterial extracellular solute-binding protein 222 458 - -
Vimu11g00974 560 MobiDBLite consensus disorder prediction 113 138 - -
Vimu11g00974 560 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 85 530 - -
Vimu11g00974 560 MobiDBLite consensus disorder prediction 123 138 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00974 - - gmx:100781794 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00974 11 10084719 10090676 Vimu11g00974 11 10084719 10090676 ECH