Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00605 ATGTTGTTGGGGGATAGATTAGTCCAAGTTCATCATGGACTTCCTCAAGAACATGTGGTTTCTCTGCGAAGAAACGTGTCAAGAAAGCGATATCTTAAATCTGGGGTTGGTATGGACGATAGGGGATGGACTTTGCTTCATGTTGCTGCTCGGATGGGTGATCTGAAATGGGTAAAACAACTCCTTGATGATGGGATGGGCGTAAATGTGGCTGCATGTGGCCCAAAATCAAAAGGGATGACTCCCCTCCACCTTGCTGCCGAAGGTGGCCACCTTGAAGTGATGGATGAATTGCTTGAACGAGGAGCTAATATTGATGCTAGAACCAAGGGCGCTTGTGGATGGACTCCACTTCATTGTGCTGCAAAAGAAAGGCGGAGGGAGGCTGTGAAATTCTTGGTTGAGAATGGAGCTTTCCTGCCACCTGATCTGAACGATGGTAGGTTCAATCCCCCTCTTCACTACTGCCCTGGTCTAGAGTGGGCCTACGAGGAGATGAAGAAACTCCAAGAAAACACGTTGAGATGCTAG 531 0.4821 MLLGDRLVQVHHGLPQEHVVSLRRNVSRKRYLKSGVGMDDRGWTLLHVAARMGDLKWVKQLLDDGMGVNVAACGPKSKGMTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTPLHCAAKERRREAVKFLVENGAFLPPDLNDGRFNPPLHYCPGLEWAYEEMKKLQENTLRC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00605 176 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Pte12g00605 176 Pfam Ankyrin repeats (3 copies) 74 138 IPR002110 GO:0005515
Pte12g00605 176 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Pte12g00605 176 Pfam Ankyrin repeat 42 69 IPR002110 GO:0005515
Pte12g00605 176 ProSiteProfiles Ankyrin repeat profile. 41 73 IPR002110 GO:0005515
Pte12g00605 176 ProSiteProfiles Ankyrin repeat profile. 113 138 IPR002110 GO:0005515
Pte12g00605 176 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 39 155 - -
Pte12g00605 176 PRINTS Ankyrin repeat signature 129 143 IPR002110 GO:0005515
Pte12g00605 176 PRINTS Ankyrin repeat signature 79 94 IPR002110 GO:0005515
Pte12g00605 176 SMART ANK_2a 78 107 IPR002110 GO:0005515
Pte12g00605 176 SMART ANK_2a 113 146 IPR002110 GO:0005515
Pte12g00605 176 SMART ANK_2a 41 70 IPR002110 GO:0005515
Pte12g00605 176 ProSiteProfiles Ankyrin repeat region circular profile. 113 138 - -
Pte12g00605 176 Gene3D - 30 173 IPR036770 -
Pte12g00605 176 ProSiteProfiles Ankyrin repeat region circular profile. 41 70 - -
Pte12g00605 176 SUPERFAMILY Ankyrin repeat 39 156 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00605 Pte-Chr12 5489678 5491021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00605 44 154 Miscellaneous Gene Families AT2G31820 35.345 2.81e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00605 - - qsa:O6P43_033433 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00605 12 5489678 5491021 Pte12g00605 12 5489678 5491021 RCT