Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0343 ATGCTGGAGGCAGAGCCAGTTTTGTTCAGAAAGAGTCTTTCGAGAAGGCGCATGTTGAGACCTGGCGTCGGCACTGATGATAGGGGCTGGACCCCACTTCATGTTTATGCTCGAAAAGGTGATCTCAAACTGGTAAAAAAGCTTCTCGACCAAGGAATGGATGTCAATGTGACTGCATGGGGCCCTAAATCAAAAGGGGTGACCCCTCTCCACCTTGCAGCTGAAGGTGGCCACCTTGAAGTGATGGATGAACTGCTTGAGCGCAGTGCCAACATTGATGCCAGAACCAAGGGTGCCTGTGGCTGGACACCACTGCACATTGCTGCTAAAGAAAGGAGGAGAGACACTGTGAAATTCTTAGTAGAGAATGGAGCATTCTTGCCACCTGATATGAATGATAGCAGATTTAATCCTCCACTTCATTACTGCCCTGGACTTGAATGGGCATATGAGGAGATGATGCGACTCAAACAGGAAGACTTATCAGCGGGTGAGACATCGTACACCTCTGAAAGTTGA 519 0.4875 MLEAEPVLFRKSLSRRRMLRPGVGTDDRGWTPLHVYARKGDLKLVKKLLDQGMDVNVTAWGPKSKGVTPLHLAAEGGHLEVMDELLERSANIDARTKGACGWTPLHIAAKERRRDTVKFLVENGAFLPPDMNDSRFNPPLHYCPGLEWAYEEMMRLKQEDLSAGETSYTSES 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0343 172 Pfam Ankyrin repeats (3 copies) 65 125 IPR002110 GO:0005515
Lal15g0343 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Lal15g0343 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Lal15g0343 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Lal15g0343 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Lal15g0343 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Lal15g0343 172 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 7 171 - -
Lal15g0343 172 SUPERFAMILY Ankyrin repeat 26 143 IPR036770 -
Lal15g0343 172 PRINTS Ankyrin repeat signature 66 81 IPR002110 GO:0005515
Lal15g0343 172 PRINTS Ankyrin repeat signature 116 130 IPR002110 GO:0005515
Lal15g0343 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Lal15g0343 172 Pfam Ankyrin repeat 29 57 IPR002110 GO:0005515
Lal15g0343 172 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 7 171 - -
Lal15g0343 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Lal15g0343 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Lal15g0343 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Lal15g0343 172 Gene3D - 21 165 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0343 Lal-Chr15 2325047 2327158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0343 33 159 Acyl Lipid Metabolism Gene Families AT5G53470 33.071 7.90e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0343 - - aprc:113868977 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0343 15 2325047 2327158 Lal15g0343 15 2325047 2327158 ECH
Lal15g0343 15 2325047 2327158 Lal23g1160 23 13030575 13033013 LSH