Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1789 ATGGATATCTTAACTCACTGCAATCTCTCACAACCGCGTTACACTCTTCATTTCCAAAACCCTAATCATTCCTTCCTCACCATCTTCCCTTCCACAACCACCGCATCTTCACTTCCTTTCAACGCCTCCCTCCGATCTTTTGCTCGCCGGAATCTCATCTTTCATTCGCCGCCGTTATCCACTTCCTCCGACCACCATCGATGTTCCGATACGCCGCTCCTCAAGTTGCCTTTCGATTTTGTGCGCCTCTCTGTATCTGCGGCGATGTTTGTGTGCTTTGGATTCTGCTTTGGAATTCGATCGTGTTCGGCTTCTTCACCATCTCTAATTGCTTCTCCTTCATCGGTTCAGGTGGAGGAGAATTCAACTCAAGGTGATCATGATGGAAGAGAACATGATAAAAAGGAAGATGTAGTAAATAAGGATTTAGAAGAAGCTTTTAATGCTTGGAAATCTAAAACATATGCATTGACTGTTCCTTTGAAGGTTGTTGCTCTAAGTGGCTCTGTCCCTCCTTCATGGATCAAGGACTTCATAAATTCTCAAGGGAAGAGACTAAAGTTTAACTTGAAGTATCGTGCAAGCCTTGAGAGTATCTTTTCTGATCTCTCAATTCCTTTATCAAAAGGAGATCCTGGGCCTGCTTCTGCTTTGGCAGCAGATATTGTTGGTATTGGTGATTCATGGCTCAAATTTGCTGTTAACAAAGCTGTCATTGAGCCAATGCGAGATGTAGAAGATCAGGATTGGTTTAAAGCCTTAGATGAGAAATGGAAGATATACCTACGCAGGAACAATGACGGAGAAATAGATCCTAAAGGTGATATATGGGCTGTTCCGTATCGATGGGGCTGCATGGTTATAGCATACAAGACAAATAAATTTCATAAGCATAAGCTGGCTCCTATAGAGGACTGGACAGATCTTTGGCGACCTGATCTTGCTGGAAGAATTTCAATGGTTGATTCTCCTAGAGAAGTTGTTGGTGCAGTTTTGAAGTATATGGGGGGTTCCTACAATACAAAGGACATCAACATGGAAGTTAATGGTGGGAGAGATGCTGTTAAGCTTAATTTAGCTTTGCTTGCAAAACAGGTTCGATTGTTTGATAGTGGAGGCTATCTAAAAGCTTTTGGAGCTGGAGATACATGGGTGGCTGTTGGGTGGAGCAGTGATATTATTCCTGTTGCTAAGCGCATGTCTAATGTTGCAGTTATTGTTCCAAAATCTGGAGCCAGTTTATGGGCAGATCTTTGGGCAATTCCTGCTGCCTCTAAGATTCAAACAAGTAAGATTGGTGGGCGTGTCCGGGGACCATCCCCGTTAATCTATCAATGGATAGAGTTTTGTCTACAAGCTGCAAGAGCATTGCCCTTTAAGCAGGAGGTGATCCCAGGTGCCTCTCCTTCTCTTCAAGATCATTCAAACAATGTGACCGCAGAGTTAACCAAGGGTAGGCCAAGGCTAAATACCAATCTCATCGATGGAGCACCACCACCTGACATTGCAGAAAGGTGCGAGTTTCTAGAGCCATTATCTAATTCAACATTGTCAGATTACCTTTGGTTGATTGCCTCTATCCAAGAACCCAGACATGGATTGGTACACAAGGTGCATCAGTATATCTCATCAATGGTTAAATTTTCCGGCGGATTAATTCAAAATTGA 1668 0.4323 MDILTHCNLSQPRYTLHFQNPNHSFLTIFPSTTTASSLPFNASLRSFARRNLIFHSPPLSTSSDHHRCSDTPLLKLPFDFVRLSVSAAMFVCFGFCFGIRSCSASSPSLIASPSSVQVEENSTQGDHDGREHDKKEDVVNKDLEEAFNAWKSKTYALTVPLKVVALSGSVPPSWIKDFINSQGKRLKFNLKYRASLESIFSDLSIPLSKGDPGPASALAADIVGIGDSWLKFAVNKAVIEPMRDVEDQDWFKALDEKWKIYLRRNNDGEIDPKGDIWAVPYRWGCMVIAYKTNKFHKHKLAPIEDWTDLWRPDLAGRISMVDSPREVVGAVLKYMGGSYNTKDINMEVNGGRDAVKLNLALLAKQVRLFDSGGYLKAFGAGDTWVAVGWSSDIIPVAKRMSNVAVIVPKSGASLWADLWAIPAASKIQTSKIGGRVRGPSPLIYQWIEFCLQAARALPFKQEVIPGASPSLQDHSNNVTAELTKGRPRLNTNLIDGAPPPDIAERCEFLEPLSNSTLSDYLWLIASIQEPRHGLVHKVHQYISSMVKFSGGLIQN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1789 555 Gene3D - 284 433 - -
Lal16g1789 555 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 86 540 - -
Lal16g1789 555 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 275 291 IPR001188 GO:0015846|GO:0019808|GO:0042597
Lal16g1789 555 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 304 318 IPR001188 GO:0015846|GO:0019808|GO:0042597
Lal16g1789 555 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 322 341 IPR001188 GO:0015846|GO:0019808|GO:0042597
Lal16g1789 555 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 408 427 IPR001188 GO:0015846|GO:0019808|GO:0042597
Lal16g1789 555 MobiDBLite consensus disorder prediction 113 135 - -
Lal16g1789 555 CDD PBP2_PotD_PotF_like_1 160 525 - -
Lal16g1789 555 Pfam Bacterial extracellular solute-binding protein 220 456 - -
Lal16g1789 555 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 86 540 - -
Lal16g1789 555 SUPERFAMILY Periplasmic binding protein-like II 161 426 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1789 - - aprc:113857970 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1789 16 17008584 17013499 Lal16g1789 16 17008584 17013499 ECH