Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00971 ATGGATGCTATAAGGAAGCAAGCAAGCAAGTTAAGGGAGCAAGTTGCAAGGCAACAGCAGGCCATACTTAGACAGTTGGGTCAAATTAGCAATGAACCACTCATGACTGATGAATCTGAAATTGAACGTCACCAGCAGCTTCAGAAGTTATACACTTCCACAAAGACAGCTAAGCATTTTCAGCGGCATATTGTTCGAGCTATTGAAGGGTTCATCTCAGTTAGCTCCAAGCAGATGGAGATAGTGAGGAAGTTGGCTAGGGACTGCTGTAGGTATGGGACCGAGAATCTTGGTAGTGGTTATCCCCTTGCAAGGGCTTCTCTTCAATTTGGTAACTCGTATGATATGATGGAAAATGAGAGGGAGACTTTGCTCGGGATCTTAGGTGATCAGATCTCTGAACCACTGCGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGGCATCTCACTCACCGGTATGATAAACTTCATCAAGAAGTAGAAGCACAGGCTGCGGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTGCAGAGAGTTCTGTGAGGCTTCAAAATGCAGAAACAAGGTTGAAAGAACTTAAATCTGCCTTGGCAGCACTTGGTAAAGAAGCTACCGCTGCGATGTTGTCCGTTGAAGAACAACAGCAACAGATGACTCTCCAGAGCCTTCGTACAATGGTGGATGCAGAGAGAGCCTATCATCAACATGTCCTTATTATTCTAGAGAAAGTATATACTGAGATAACTGAGGAGAGACAACCAAAAGAGGCTACATCAATTCCACTGCCAAGAGATGGACATAATCAACCTGCAGATGAGAATACTGCTTCAAATGGCATTGATTATAAACACAACAGTCAAACAGGCACCTACTTTTTTGCGAAGGTGGTACATCCATTTGACGCTCAAGCTGAGGGGGAGTTAAGCCTATCAGTTGATGATTTTGTTATAGTTCGTCAGGTTGGTCCGAATGGATGGTCAGAAGGAGAATGCCAAGGCAATGCTGGATGGTTTCCCACTGCTTATGTACAGAGACAGGACTTGATACCTGCCAGTAAGGTACCAGAATAA 1089 0.4463 MDAIRKQASKLREQVARQQQAILRQLGQISNEPLMTDESEIERHQQLQKLYTSTKTAKHFQRHIVRAIEGFISVSSKQMEIVRKLARDCCRYGTENLGSGYPLARASLQFGNSYDMMENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLHQEVEAQAAEVLRRRSKLRNSSVSAESSVRLQNAETRLKELKSALAALGKEATAAMLSVEEQQQQMTLQSLRTMVDAERAYHQHVLIILEKVYTEITEERQPKEATSIPLPRDGHNQPADENTASNGIDYKHNSQTGTYFFAKVVHPFDAQAEGELSLSVDDFVIVRQVGPNGWSEGECQGNAGWFPTAYVQRQDLIPASKVPE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00971 362 Gene3D SH3 Domains 298 352 - -
Vian10g00971 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Vian10g00971 362 MobiDBLite consensus disorder prediction 256 287 - -
Vian10g00971 362 PANTHER SH3 DOMAIN-CONTAINING 18 351 - -
Vian10g00971 362 Coils Coil 1 21 - -
Vian10g00971 362 Gene3D Arfaptin homology (AH) domain/BAR domain 42 265 IPR027267 -
Vian10g00971 362 Coils Coil 182 209 - -
Vian10g00971 362 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Vian10g00971 362 SUPERFAMILY BAR/IMD domain-like 43 254 IPR027267 -
Vian10g00971 362 Coils Coil 159 179 - -
Vian10g00971 362 SUPERFAMILY SH3-domain 298 354 IPR036028 GO:0005515
Vian10g00971 362 SMART SH3_2 298 353 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00971 Vian-Chr10 10504962 10509138 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00971 - - gmx:100816554 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00971 10 10504962 10509138 Vian10g00971 10 10504962 10509138 ECH