LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01040	ATGGCTACCTTGCTCCCAACACAGTGCTTTCTGCCTCCGTACTCTCCACGCTACAGTTATCGCTTCCGAAACCCTAACCTTTCCTTGCCTTTCATCCCTTCCACCAGCAAATCCATAGCGCGATTTGATGACAGAATTGGATTCTCTGGTAACCGGAATGTGATACCTCATTCACCGGCGTTACTGACCTCCGCCGAAGATGATGCATATTTCGGAAAATCTCTCAAGCTGCCTCAGACTTTGGTGCGCCTCGCATTCTCTGCTCTACTATTTCTTGGTTTCGGCTTCTGCTTTAGCGTTCGTATCTGTTCGGCCTCTTCGCCGATTCTGTCCACCAGTTCTTCCTCGCTTCAGGAGGAGCAGACAACGCAAGATGataatggaagaaaatatgatGATAACACGGAGAATGTAGTAGATAAGGAATTAGAAGAAGCTTTCGAAAAATGGAAGTCTAAGACATACGCTTTGACTGTTCCTCTGAGAATTGTTGCTCTTCGTGGATCTATCCCTCCTTCATGGACGAAGGACTTCCTGAAATCTCAAGGGAGGAGATTAAAGTTTAATATGAAGTTTAATGCTAGTCTAGAGAGCATCTTTTCTGATCTATCAGTTCCCTTTACCAAAGGCAATATTGGGCCTTCATCTGCTTTGGCAGCAGATATTGTTAGTATTGGTGACACCTGGCTCAAATTTGCCATTAACAAAGCCATAATCGAGCCAATACGAGACGTAGAAGACCAGGATTGGTTTAAAGGCTTACATGAGAAATGGAAGGTATACCTTCGCAGGAACTGTGATGGGGAAATAGATCTTAAAGGTGATATATGGGCTGCTCCATATCGCTGGGGCTGCATGGTTATTGcgtacaagaaaaataaatttcaaaagcaTAATTTGGCTCCCATGGAGGACTGGGCAGATTTATGGCGGCCTGAGCTTGCTGGGAAAATCTCAATGGTTGATTCTCCCAGAGAGGTTGTTGGTGCAGTCTTAAAGTACATGGGGGCCTCATACAACACAAATGACATGAACATGGAAGTTGCTGGTGGCAGAGATTCTGTTAAGCATAATATATCTTTACTTGGAAAGCAGGTTCAACTATTTGACAGCACACACTATTTAAAAGCTTTTGGAGTTGGAGATGTGTGGGTTGCTGTTGGATGGAGTAGCGATATTATTCCTGCTGCCAAACGCATGTCTAATGTTGCAGTAATAGTTCCAAAATCTGGAACTAGTTTATGGGCAGATCTTTGGgCGATTCCTGCTGCCTCTAGGATTCAAACAAATCGGATTGGGGGACGAGTCAGGGGACCTTCCCCATTAATCCATCAGTGGATAGAGTTTTGTCTTCAGGGTGCTAGAGCACTGCCTTTTAAGCAGGAGGTAATCCCAGGTGCCTTACCCTCTGATCTAAAGGGTTCATCGGTCGAAGTTCCCATGGAGCTCACGAAGGGCAGGCCTAAACTGGATAGCAATCTCATTGCTGGTGCACCGCCACCTGAAATATTAGAAAGATGTGAGTTTCTAGAGCCATTGTCTAATTCCGCACTGTCAGATTACCACTGGTTGCTTGCCACTATGCAGGAACCTCGCCAAGGATTGATATACAAATTACGTGAGTATATCTCATCCAGTGTTAAGATTCCAGGACATTG	1658	0.4403	MATLLPTQCFLPPYSPRYSYRFRNPNLSLPFIPSTSKSIARFDDRIGFSGNRNVIPHSPALLTSAEDDAYFGKSLKLPQTLVRLAFSALLFLGFGFCFSVRICSASSPILSTSSSSLQEEQTTQDDNGRKYDDNTENVVDKELEEAFEKWKSKTYALTVPLRIVALRGSIPPSWTKDFLKSQGRRLKFNMKFNASLESIFSDLSVPFTKGNIGPSSALAADIVSIGDTWLKFAINKAIIEPIRDVEDQDWFKGLHEKWKVYLRRNCDGEIDLKGDIWAAPYRWGCMVIAYKKNKFQKHNLAPMEDWADLWRPELAGKISMVDSPREVVGAVLKYMGASYNTNDMNMEVAGGRDSVKHNISLLGKQVQLFDSTHYLKAFGVGDVWVAVGWSSDIIPAAKRMSNVAVIVPKSGTSLWADLWAIPAASRIQTNRIGGRVRGPSPLIHQWIEFCLQGARALPFKQEVIPGALPSDLKGSSVEVPMELTKGRPKLDSNLIAGAPPPEILERCEFLEPLSNSALSDYHWLLATMQEPRQGLIYKLREYISSSVKIPGH	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g01040	552	PANTHER	SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN	72	537	-	-
	Bva08g01040	552	CDD	PBP2_PotD_PotF_like_1	160	527	-	-
	Bva08g01040	552	Gene3D	-	284	435	-	-
	Bva08g01040	552	MobiDBLite	consensus disorder prediction	114	133	-	-
	Bva08g01040	552	SUPERFAMILY	Periplasmic binding protein-like II	161	426	-	-
	Bva08g01040	552	Pfam	Bacterial extracellular solute-binding protein	220	454	-	-
	Bva08g01040	552	PRINTS	Bacterial periplasmic spermidine/putrescine-binding protein signature	304	318	IPR001188	GO:0015846\|GO:0019808\|GO:0042597
	Bva08g01040	552	PRINTS	Bacterial periplasmic spermidine/putrescine-binding protein signature	408	427	IPR001188	GO:0015846\|GO:0019808\|GO:0042597
	Bva08g01040	552	PRINTS	Bacterial periplasmic spermidine/putrescine-binding protein signature	275	291	IPR001188	GO:0015846\|GO:0019808\|GO:0042597
	Bva08g01040	552	PRINTS	Bacterial periplasmic spermidine/putrescine-binding protein signature	322	341	IPR001188	GO:0015846\|GO:0019808\|GO:0042597
	Bva08g01040	552	PANTHER	SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN	72	537	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01040	Bva-Chr8	5313478	5316779	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01040	-		-	aprc:113857970	768.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g01040	08	5313478	5316779	Bva08g01040	08	5313478	5316779	ECH