Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1273 ATGGATGCTATAAGGAAGCAAGCTAGCAAATTAAGGGAACAAGTGGCCAAGCAGCAGCAGGCTATACTTAGACAATTAGGCCAAATAAGCAATGAACCGCTTATGACGGATGAATCTGAACTGGAATGTCATCAACAACTTAGAAAGTTATACAATTCTACCAAGGCAGCCAAGCATTTTCAGAGGCATATTGTTCGTGGGATTGAAGGTTTCATCTCTGTTAGTTCAAAGCAGATGGAGATAGTAAGGAAATTGGCTAAAGACTGTTGTAAGTACGCAACTGAGAATCAAGGCAGTAGATATCCACTTGCAAGCGCTTCTCTTCACATGGGTAACTCATATGATTTAATGGAAAATGAAAGGGAGACTTTGCTTGGGATCTACAGTCATCAGATCTCTGAGCCATTACGGGCACAAATAACTGGAGCTCCTCTAGATGATGCACGCCACCTCACTTATCGCTATGACAAACTTTTTCAAGAGGTAGAAGCCCAGGCTGCTGAAGTTTTGAGGCGACGTTCAAAGTTGAGGGATTCTTCTATTTCTGCAGAGAGCTCCATCAAGCTTCAAAATGCAGAAAAAAGGCTGAAAGAGCTTAAATCAGCCTTGGTGGCACTTGGTAGAGAAGCAACTGCTGCTATGTTGTCAGTTGAAGATCAACAGCAACAGATAACGCTCAAGAGCCTTTGTACAATGGTGGATGCTGAGAGAGCTTATCATCAACATGCCCTTGTTATTTTAGAGAAGCTATATGCTGAGATGATTCTGGAGAAGCAATCAAAAGAGTCTTCAGCCGATCCTGTGCCAAGGGATGGATATAATCAACCTGTTGTTGAGAATGCTAATCTAAATAGTTTTGATCATCAAAGCACTGTTCCAACAGGCACTTTCTATTTTGCGAAGGTGGTACACCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGTTTGTCAGTTGATGATTATGTTGTGGTTCGGCAGGTAGCTCCCAATGGATGGTCTGAAGGAGAATGCAAAGGCAATGCTGGATGGTTTCCCTCTGCATATGTTGAGAGACAGGACAAAATACCAGCTAGCATGGTAATGGAAATAACCTCATCATCTTGA 1104 0.4257 MDAIRKQASKLREQVAKQQQAILRQLGQISNEPLMTDESELECHQQLRKLYNSTKAAKHFQRHIVRGIEGFISVSSKQMEIVRKLAKDCCKYATENQGSRYPLASASLHMGNSYDLMENERETLLGIYSHQISEPLRAQITGAPLDDARHLTYRYDKLFQEVEAQAAEVLRRRSKLRDSSISAESSIKLQNAEKRLKELKSALVALGREATAAMLSVEDQQQQITLKSLCTMVDAERAYHQHALVILEKLYAEMILEKQSKESSADPVPRDGYNQPVVENANLNSFDHQSTVPTGTFYFAKVVHPFDAQAEGELSLSVDDYVVVRQVAPNGWSEGECKGNAGWFPSAYVERQDKIPASMVMEITSSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1273 367 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Dere09g1273 367 SUPERFAMILY SH3-domain 294 358 IPR036028 GO:0005515
Dere09g1273 367 Coils Coil 1 21 - -
Dere09g1273 367 PANTHER SH3 DOMAIN-CONTAINING 19 352 - -
Dere09g1273 367 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Dere09g1273 367 Gene3D Arfaptin homology (AH) domain/BAR domain 28 266 IPR027267 -
Dere09g1273 367 Coils Coil 182 209 - -
Dere09g1273 367 CDD SH3_Intersectin_4 299 350 - -
Dere09g1273 367 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Dere09g1273 367 Coils Coil 159 179 - -
Dere09g1273 367 Gene3D SH3 Domains 296 352 - -
Dere09g1273 367 SMART SH3_2 298 353 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1273 Dere-ChrDere09 16669843 16674530 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1273 09 16669843 16674530 Dere09g1273 09 16669843 16674530 ECH