Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01086 atggatgCTATAAGGAAACAAGCTAGCAGATTAAGGGAGCAAGTTGCCAAACAACAACAGACTATACTTAGACAGTTGGGTCAACTTAGCAATGAACCGCTCATGGCCGATGAATCTGAACTTGAATGTTATCATAAACTTCAAAAGTTATACACTTCTACAAAGACTGCTAAGCATTTTCAGCGGCATATTGTTCGTGGTATCGAAGGATTCATCTCTGTTAGTTCCAAGCAAATGGAGATAGTGAGGAAGTTGGCGAAGGACTGTTGCAAATATGGGACTGAGAATGAAAAGCATGATAGTAATTACCCCCTTGCAAGTGCTTCTCTTCAATTCGGTAATTCATATGATATATTGGAAAATGAGAGGGAGACTTTGCTTGGGAGCTTACGTGATCAGACCTCGGAGCCACTGCGGGCACAAATAACAGGAGCTCCTTTGGAAGATGCACGCCACCTCACCCACAACTATGACAAACTTCGTCAAGAAGTAGAAGGCCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGagggattcttctctttctgcAGAGACTTCCATGAGGCTTCAGAATGCAGAAAAAAGGTTGAAAGACCATAAATCTGCCTTGGTGGCACTTGGCAGAGAAGCAACTTCTGCTATGTCGTCAGTTGAAGAACAACAGCAACATGTAACTCTCCAGAGTCTTTCGACAATGGTGGATGCTGAACGAACCTATCATCAGCATGCCCTTGTTATTCTAGATAAACTATACACTGAGATGATCATTATTGAGGAGAGACAATCAAAAGACTCGACATCATTTCCATTGCCAAAAGATGGACATAATCAACCTGCAGATGAGAAAGCTAATTCAAATGGCATTGATGGTAAACACAACACCCAAATGGGCACATACTTTTTCGCTAAGGTCATACATCCATTTGACGCTCAAGCTGAAGGGGAGTTAAATTTATCAGTTGACGATTATGTTGTAGTCCGTCAGGTTGCTGCCAATGGATGGTCGGAAGGAGAATACAATGGCAATGCTGGATGGTTTCCCTCTGCATATGTACAGAGACAGGACGTAGTACCAGCGAACAAGATACCAGAATAA 1101 0.416 MDAIRKQASRLREQVAKQQQTILRQLGQLSNEPLMADESELECYHKLQKLYTSTKTAKHFQRHIVRGIEGFISVSSKQMEIVRKLAKDCCKYGTENEKHDSNYPLASASLQFGNSYDILENERETLLGSLRDQTSEPLRAQITGAPLEDARHLTHNYDKLRQEVEGQAAEVLRRRSKLRDSSLSAETSMRLQNAEKRLKDHKSALVALGREATSAMSSVEEQQQHVTLQSLSTMVDAERTYHQHALVILDKLYTEMIIIEERQSKDSTSFPLPKDGHNQPADEKANSNGIDGKHNTQMGTYFFAKVIHPFDAQAEGELNLSVDDYVVVRQVAANGWSEGEYNGNAGWFPSAYVQRQDVVPANKIPE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01086 366 Coils Coil 150 170 - -
Tsu05g01086 366 SUPERFAMILY SH3-domain 301 360 IPR036028 GO:0005515
Tsu05g01086 366 Coils Coil 1 21 - -
Tsu05g01086 366 PANTHER SH3 DOMAIN-CONTAINING 1 364 - -
Tsu05g01086 366 SUPERFAMILY BAR/IMD domain-like 46 256 IPR027267 -
Tsu05g01086 366 Pfam Variant SH3 domain 306 354 IPR001452 GO:0005515
Tsu05g01086 366 ProSiteProfiles Src homology 3 (SH3) domain profile. 299 358 IPR001452 GO:0005515
Tsu05g01086 366 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 1 1 364 - -
Tsu05g01086 366 SMART SH3_2 302 357 IPR001452 GO:0005515
Tsu05g01086 366 MobiDBLite consensus disorder prediction 265 292 - -
Tsu05g01086 366 Gene3D SH3 Domains 285 364 - -
Tsu05g01086 366 Coils Coil 184 211 - -
Tsu05g01086 366 Gene3D Arfaptin homology (AH) domain/BAR domain 42 268 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01086 Tsu-Chr5 9501516 9505862 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01086 - - mtr:MTR_5g026400 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01086 05 9501516 9505862 Tsu05g01086 05 9501516 9505862 ECH