Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06094 ATGTTAGGTCCTCTGATTCAGAGAAGAAGAACCCTACTGAAGCTGAAAAGGCTCACAGTGATAAGCGTCTCAGGAATTGCTCGTGAAAGAAGGAGTAAGAAGAAGGCTGGTGTTGTTATCAATATTGATTACCTAAAATCTTATGAGGAATCCATTACTAAACAATTGGATCTTGGAATAGCCAAGAGACTTCATAAAAGAAAAGGAAATGTTGTGATGGTTGGATCTACTAGTGTTGCTGCTGATAGTGGTGAATCTGCGGGTGATGAATCTGAAGGTGTTGGTGTTGCTAAAAAGAGTGCATCTGAATGTGATGATATTGCTGAAAAGAGTGCATATGATGGTGATGATGCTAATGATGAAGGAAAAGATCCCAGAGAGAGAAACATGGATGCTATAAGGAAGCAAGCTGCCAGATTAAGGGAACAAGTTGCCAAGCAACAACAGACTATACTTAGACAATTGGGTCAACTTAGCAATGAACCCCTCATGGCCGATGAATCTGAACTTGAATGTTACCAGAAACTTCAAAAATTATACACGTCTACAAAGACTGCTAAGCATTTTCAGCGGCATATTGTTCGTGGTATTGAAGGATTCATCTCTGTTAGTTCCAAGCAGATGGAGATAGTGAGGAAATTGGCTAAGGACTGTTGTAAGTATGGGACTGAAAATAAGGATCACGCTAGTAATTATCCCCTTGCAAGGGCTTCTCTTCAATTCGGTAATTCATATGATTTATTGGAAAATGAGAGGGAGACTTTGCTTGGGATCTTATGTGATCAGATCTCTGAGCCACTGCGGGCACAAATAACAGGAGCTCCTTTGGAAGATGCACGCCACCTCACTCACAACTACGACAAACTTCGTCAAGAAGTAGAAGGCCAGGCTGCTGAAGTTTTGAGGCGTAGATCAAAGTTGAGGGATTCTTCTCTTTCTTCAGACAGTTCCATGAGGCTTCAGAATGCAGAGAAAAGGTTGAAAGAACTTAAATCTGCCTTGGTGGCACTCGGTAGAGAAGCAACTTCTGCTATGTTGTCAGTTGAAGAACAACAACAACATATAACTCTGCAGAGTCTTTCTACATCGGTGGATGCTGAGCGAGCCTATCACCGGCATGCCCTTGTGATTCTAGATAAACTATATGCTGAGATGATCATGATTGACGAGAGACAAACGAAAGAGCCCACATCGTTTCCACTCCCAAAAGATGGATATAATCAACCCGCAGATGAGAAACTTAATTCAAATGGCATTGATTATAAACACGACACCCAAATGGGCACATACTTTTTTGCAAAGGTCATCCATACATTTGACGCTCAAGCTGAAGGGGAGTTAAGTTTATCAGTTGACGATTATGTTGTAATACGTCAGGTTGCTGCGAATGGATGGTCTGAAGGAGAATGCAATGGCAACGCTGGATGGTTTCCCTCTGCATATGTACAGAGACAGGACGTAGTACCAGCGAACAAGATACCGGAGTAA 1488 0.42 MLGPLIQRRRTLLKLKRLTVISVSGIARERRSKKKAGVVINIDYLKSYEESITKQLDLGIAKRLHKRKGNVVMVGSTSVAADSGESAGDESEGVGVAKKSASECDDIAEKSAYDGDDANDEGKDPRERNMDAIRKQAARLREQVAKQQQTILRQLGQLSNEPLMADESELECYQKLQKLYTSTKTAKHFQRHIVRGIEGFISVSSKQMEIVRKLAKDCCKYGTENKDHASNYPLARASLQFGNSYDLLENERETLLGILCDQISEPLRAQITGAPLEDARHLTHNYDKLRQEVEGQAAEVLRRRSKLRDSSLSSDSSMRLQNAEKRLKELKSALVALGREATSAMLSVEEQQQHITLQSLSTSVDAERAYHRHALVILDKLYAEMIMIDERQTKEPTSFPLPKDGYNQPADEKLNSNGIDYKHDTQMGTYFFAKVIHTFDAQAEGELSLSVDDYVVIRQVAANGWSEGECNGNAGWFPSAYVQRQDVVPANKIPE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06094 495 Gene3D Arfaptin homology (AH) domain/BAR domain 171 386 IPR027267 -
Vifa1g06094 495 Coils Coil 313 340 - -
Vifa1g06094 495 Gene3D SH3 Domains 416 493 - -
Vifa1g06094 495 SUPERFAMILY SH3-domain 430 489 IPR036028 GO:0005515
Vifa1g06094 495 Coils Coil 279 299 - -
Vifa1g06094 495 PANTHER SH3 DOMAIN-CONTAINING 147 484 - -
Vifa1g06094 495 SUPERFAMILY BAR/IMD domain-like 174 385 IPR027267 -
Vifa1g06094 495 SMART SH3_2 431 486 IPR001452 GO:0005515
Vifa1g06094 495 ProSiteProfiles Src homology 3 (SH3) domain profile. 428 487 IPR001452 GO:0005515
Vifa1g06094 495 Pfam Variant SH3 domain 435 483 IPR001452 GO:0005515
Vifa1g06094 495 Coils Coil 130 150 - -
Vifa1g06094 495 MobiDBLite consensus disorder prediction 79 102 - -
Vifa1g06094 495 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06094 Vifa-Chr1 952824952 952834778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06094 - - tpra:123907560 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06094 1 952824952 952834778 Vifa1g06094 1 952824952 952834778 ECH