Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
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Select Orthogroup Total Tree Image Download Acco Accr Adu Aed Aev Ahy Aip Alju Amo Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Eupl Glsi Gma Gso Lal Lan Lapu Lasa Lele Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pte Pumo Pvu Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra Vvi
OG0000000 4025 2 0 3 25 6 298 3 0 39 14 177 0 2 1 4 28 0 2 2 84 2 4 178 240 49 0 200 0 15 354 6 49 0 148 6 9 1 82 121 1 10 34 58 47 1 1 1 172 241 642 0 86 0 7 568 0 2
OG0000001 3631 20 141 16 9 10 121 135 17 20 3 41 31 16 42 9 33 33 1 27 33 27 11 12 3 7 0 74 35 33 295 5 241 16 72 2 1 27 135 9 1 14 2 22 454 0 12 180 119 186 409 1 126 1 2 337 1 1
OG0000002 3033 15 25 65 0 87 179 114 7 11 38 118 18 9 28 0 5 1 0 2 5 6 2 93 30 74 10 0 6 4 22 0 238 8 12 0 1 47 113 29 0 0 5 45 41 6 1 110 18 183 242 10 24 237 260 400 26 3
OG0000003 2808 53 52 48 10 32 140 65 44 115 34 90 46 23 29 21 47 22 27 17 6 26 65 74 10 10 41 25 96 35 36 25 219 27 45 56 31 72 25 58 15 68 35 57 127 28 50 19 48 136 39 27 33 28 58 80 16 47
OG0000004 2744 47 84 29 22 42 19 169 70 37 7 33 24 35 44 9 94 10 14 44 14 75 72 13 36 12 1 4 54 29 163 12 108 48 61 11 4 35 32 23 1 28 4 61 412 2 17 139 46 46 287 1 11 11 0 36 0 2
OG0000005 2687 15 15 40 1 14 149 57 15 123 2 173 7 4 12 4 0 1 0 9 2 0 30 50 213 13 0 75 7 32 139 3 169 19 73 0 4 44 16 0 0 0 0 23 285 0 0 180 94 78 98 0 23 3 86 287 0 0
OG0000006 2642 24 11 86 10 30 163 44 24 92 24 113 14 16 11 32 46 32 13 14 5 54 21 56 2 5 28 31 33 27 36 84 254 12 97 57 13 104 26 34 0 33 85 33 47 16 23 17 40 52 65 27 25 64 100 151 26 60
OG0000007 2431 6 48 50 5 34 280 75 3 113 1 117 25 2 17 14 0 0 0 12 1 1 3 46 6 6 0 160 4 1 162 0 60 2 43 6 5 2 11 10 1 0 5 58 206 2 0 58 30 58 25 8 31 133 93 282 110 0
OG0000008 2204 6 32 70 6 13 273 79 6 223 10 107 6 6 6 3 4 4 3 3 23 2 13 97 98 51 2 33 11 26 41 4 82 7 22 19 5 62 24 55 0 3 66 4 234 1 0 55 18 53 25 3 15 16 47 111 14 2
OG0000009 2070 4 57 45 0 18 136 85 5 53 17 96 13 3 31 19 11 1 1 0 1 3 0 67 8 161 34 1 7 5 131 0 31 9 23 0 3 40 0 47 0 0 1 76 35 4 0 30 36 50 365 9 14 82 28 99 75 0
   
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