Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0840 ATGCCTCAAGAGCAGCCGGGGTCCTTTCGAAGGAGCCTGTCAAGAAGGCGCTCCTTAAGGTCTGGGACAGATACGGATGATAGGGGGTGGACCTCACTTCATGTTTACTCACGCAAAGGGGATCTCAAATTGGTTAAAAAGCTTATTGACGAAGGAATGGATGTAAATGTTATTGCATGGGGTCCAAAATCTAAAGGTGTGACCCCGCTTCATCTTGCTGCTGAAGGTGGCCATCTTAAAGTCATGGATGAATTACTTGAGCGTGGTGCTAACATTGATGCCAGGACGAAGGGTGCTTGTGGCTGGACACCTCTCCACATTGCAGCTAAAGAAAGGAGGAGGGCTGCGGTGAAATTCCTGATAGAGAATGGAGCATTTTTGCCTCCTGATATCAACGATTGCAGATTTAATCCCCCAGTTCATTACTGCCCAGGACTTGAATGGGCCTATGAGGAAATGAAGCTTCAGTATGAAAACTCATCATCATCTGGGGAGACCTCCAGCAGGTCAGATAGCTGA 519 0.4778 MPQEQPGSFRRSLSRRRSLRSGTDTDDRGWTSLHVYSRKGDLKLVKKLIDEGMDVNVIAWGPKSKGVTPLHLAAEGGHLKVMDELLERGANIDARTKGACGWTPLHIAAKERRRAAVKFLIENGAFLPPDINDCRFNPPVHYCPGLEWAYEEMKLQYENSSSSGETSSRSDS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0840 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Lele49g0840 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Lele49g0840 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Lele49g0840 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Lele49g0840 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Lele49g0840 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Lele49g0840 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Lele49g0840 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Lele49g0840 172 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 25 141 - -
Lele49g0840 172 Pfam Ankyrin repeats (3 copies) 65 125 IPR002110 GO:0005515
Lele49g0840 172 PRINTS Ankyrin repeat signature 116 130 IPR002110 GO:0005515
Lele49g0840 172 PRINTS Ankyrin repeat signature 66 81 IPR002110 GO:0005515
Lele49g0840 172 Gene3D - 61 162 IPR036770 -
Lele49g0840 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Lele49g0840 172 SUPERFAMILY Ankyrin repeat 25 143 IPR036770 -
Lele49g0840 172 MobiDBLite consensus disorder prediction 1 26 - -
Lele49g0840 172 Gene3D - 10 60 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0840 Lele-ChrLele49 5207028 5208527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0840 32 150 Acyl Lipid Metabolism Gene Families AT5G53470 32.773 1.15e-12 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0840 49 5207028 5208527 Lele49g0840 49 5207028 5208527 ECH
Lele49g0840 49 5207028 5208527 Lele51g0858 51 5267819 5270338 hybridization
Lele49g0840 49 5207028 5208527 Lele52g0859 52 5563360 5564953 hybridization