Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1130 ATGAGATGTACTGGTGCATTTTGTACATTAATCCACGTCCAGTTTCCTGCTTTGAGGCAAGCAGCCAGCGGTGTTCAGATTCAGACTGTTGAGAAAATGGATGCTATAAGGAAGCAAGCTAGCAAATTAAGAGAACAAGTTGCCAAGCAACAGCAGGCTATACTTAGACAATTAGGCCAAATTAGCAATGAACCGCTTGTGACGGATGAATCTGAACTTCAATGTCACCAACAACTTAGAAAGTTATACAGTTCTACAAAGGCAGCCAAGCATTTTCAGCGGCACATTGTTCGTGGAATTGAAGGTTTCATCTCTGTTAGTTCAAAGCAGATGGAAATAGTAAGGAAGCTGGCTAAAGACTGTTGTAAGTACGGGACTGAGAATCAAGGTAGTAGTTATCCTTTGGCAAAAGCCTCTCTTCACATGGGTAACTCGTATGATTTAATGGAAAATGAAAGGGAGACTTTGCTTGGGATCCTCAGCCAGCAGGTCTCTGAGCCACTACGGGCACAAATAACAGGAGCTCCTTTGGAGGATGCACGTCACCTCACTTACCGCTATGACAAACTTTGTCAAGAGGTTGAAGCCCAGGCTGCTGAAGTTTTAAGGCGCCGTTCAAAGTTGAGGGATTCTTCTATTTCTGCAGAGAGCTCCATGAAGCTTCAAAATGCAGAAGCAAAGTTGAAAGAGCTTAAATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACTTCTGCTATGTTGTCAGTTGAAGATCAACAGCAACAGATAACTCTCAAGAGCCTTCGTACAATGGTGGATACTGAGAGAGCTTATCATCAGCATGCCCTTGTTATTTTAGAGAAGCTACATGCTGAGATGCTTTTGGAGAAGCAATCAAGAGAGTCTTCTGCAGTTCCAGTGCCAAGAGATGGATATAATCAACCTGCAGTTGAGAATGCTAATTTAAATGGTTTTGATCAACACACTGGTCCAATGGGCACCTACTTTTTTGCGAAGGTTGTACACCCATTTGATACTCAAGCTGAAGGCGAGTTAAATTTATCAGTTGATGATTATCTCGTGGTTCGTCAGGTGGCTACCAATGGATGGTCTGAAGGAGAATGCAAGGGCAATGCTGGATGGTTTCCCTCTGCATATGTAGAGAAACAGGACAAAATACCAGCTAGCATGATAATGGAAAAAACCTCAACGTCTTGA 1197 0.4311 MRCTGAFCTLIHVQFPALRQAASGVQIQTVEKMDAIRKQASKLREQVAKQQQAILRQLGQISNEPLVTDESELQCHQQLRKLYSSTKAAKHFQRHIVRGIEGFISVSSKQMEIVRKLAKDCCKYGTENQGSSYPLAKASLHMGNSYDLMENERETLLGILSQQVSEPLRAQITGAPLEDARHLTYRYDKLCQEVEAQAAEVLRRRSKLRDSSISAESSMKLQNAEAKLKELKSALVALGREATSAMLSVEDQQQQITLKSLRTMVDTERAYHQHALVILEKLHAEMLLEKQSRESSAVPVPRDGYNQPAVENANLNGFDQHTGPMGTYFFAKVVHPFDTQAEGELNLSVDDYLVVRQVATNGWSEGECKGNAGWFPSAYVEKQDKIPASMIMEKTSTS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1130 398 ProSiteProfiles Src homology 3 (SH3) domain profile. 326 385 IPR001452 GO:0005515
Glsi05g1130 398 Pfam Variant SH3 domain 333 381 IPR001452 GO:0005515
Glsi05g1130 398 Coils Coil 33 53 - -
Glsi05g1130 398 Gene3D SH3 Domains 329 383 - -
Glsi05g1130 398 SUPERFAMILY BAR/IMD domain-like 74 286 IPR027267 -
Glsi05g1130 398 SUPERFAMILY SH3-domain 326 389 IPR036028 GO:0005515
Glsi05g1130 398 Coils Coil 214 241 - -
Glsi05g1130 398 PANTHER SH3 DOMAIN-CONTAINING 48 382 - -
Glsi05g1130 398 Gene3D Arfaptin homology (AH) domain/BAR domain 27 289 IPR027267 -
Glsi05g1130 398 Coils Coil 191 211 - -
Glsi05g1130 398 SMART SH3_2 329 384 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1130 Glsi-ChrGlsi05 61014468 61020166 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1130 05 61014468 61020166 Glsi05g1130 05 61014468 61020166 ECH