Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03296 ATGGATGCTATAAGGAAGCAAGCAAGCAAGTTAAGGGAGCAAGTTGCAAGGCAACAGCAGGCCATACTTAGACAGTTGGGTCAAATCAGCAATGAACCGCTCATGACTGATGAATCTGAAATTGAACGTCACCAGCAGCTTCAGAAGTTATACACTTCCACAAAGACAGCTAAGCATTTTCAGCGGCACATTGCTCGAGCTATTGAAGGATTCATCTCTGTTAGCTCCAAGCAGATGGAGATAGTGAGGAAGTTGGCTAGGGACTGCTGTAGGTATGGGACTGAGAATCTTGGTAGTGGTTATCCCCTTGCAAGAGCTTCTCTTCAATTTGGTAACTCGTATGATATGATGGAAAATGAGAGGGAGACTTTGCTCGGGATCTTAGGTGATCAGATCTCTGAACCACTGCGGGCACAAATAACAGGAGCTCCTTTGGAGGATGCACGCCATCTCACTCACCGGTATGATAAACTTCATCAAGAAGTAGAAGCACAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTGCAGAGAGTTCTGCGAGGCTTCAAAATGCAGAAACAAGGTTGAAAGAACTTAAATCTGCCTTGGCAGCACTTGGTAAAGAAGCTACTGCTGCGATGTTGTCCGTTGAAGAACAACAGCAACAGATGACTCTCCAGAGCCTTCGTACAATGGTGGATGCAGAGAGAGCCTATCATCAACATGTCCTTATTATTCTCGAGAAAGTATATACTGAGATAACTGAGGAGAGACAACAAACAGAGGCTACATCAGTTCCACTGCCAACAGATGGACATAATCAACCTGCAGATGAGAATACTGCTTCAAATGGCATTGATTATAAACACAACAGTCAAACAGGCACCTACTTTTTTGCGAAGGTGGTACATCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGCCTATCAGTTGATGATTTTGTTGTAGTTCGTCAGGTTGGTCCGAATGGATGGTCAGAAGGAGAATGCCAAGGAAATGCTGGATGGTTTCCCACTGCTTATGTACAGAGACAGGACTTGATACCTGCCAGCAAGGTACCAGAATAA 1089 0.4472 MDAIRKQASKLREQVARQQQAILRQLGQISNEPLMTDESEIERHQQLQKLYTSTKTAKHFQRHIARAIEGFISVSSKQMEIVRKLARDCCRYGTENLGSGYPLARASLQFGNSYDMMENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLHQEVEAQAAEVLRRRSKLRNSSVSAESSARLQNAETRLKELKSALAALGKEATAAMLSVEEQQQQMTLQSLRTMVDAERAYHQHVLIILEKVYTEITEERQQTEATSVPLPTDGHNQPADENTASNGIDYKHNSQTGTYFFAKVVHPFDAQAEGELSLSVDDFVVVRQVGPNGWSEGECQGNAGWFPTAYVQRQDLIPASKVPE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03296 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Vimu7g03296 362 SUPERFAMILY BAR/IMD domain-like 43 254 IPR027267 -
Vimu7g03296 362 Gene3D SH3 Domains 298 352 - -
Vimu7g03296 362 Coils Coil 1 21 - -
Vimu7g03296 362 Coils Coil 182 209 - -
Vimu7g03296 362 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Vimu7g03296 362 SUPERFAMILY SH3-domain 298 354 IPR036028 GO:0005515
Vimu7g03296 362 SMART SH3_2 298 353 IPR001452 GO:0005515
Vimu7g03296 362 MobiDBLite consensus disorder prediction 258 281 - -
Vimu7g03296 362 Coils Coil 159 179 - -
Vimu7g03296 362 Gene3D Arfaptin homology (AH) domain/BAR domain 42 267 IPR027267 -
Vimu7g03296 362 PANTHER SH3 DOMAIN-CONTAINING 18 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03296 Vimu-Chr7 27961126 27965347 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03296 - - gmx:100816554 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03296 7 27961126 27965347 Vimu7g03296 7 27961126 27965347 ECH