Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01601 ATGGATGCTATAAGGAAACAAGCTAGCAGATTAAGAGAGCAAGTTGCCAAACAACAACAGACTATACTTAGACAGTTGGGTCAACTTAGCAATGAACCGCTCATGGCCGATGAATCTGAACTTGAATGTTATCATAAACTTCAAAAGTTATACACTTCTACAAAGACTGCTAAGCATTTTCAGCGGCATATTGTTCGTGGTATCGAAGGATTCATCTCTGTTAGTTCCAAGCAAATGGAGATAGTGAGGAAGTTGGCGAAGGACTGTTGCAAGTATGGGACTGAGAATGAAAAGCATGATAGTAATTACCCCCTTGCAAGTGCTTCTCTTCAATTCGGTAACTCATATGATATATTGGAAAATGAGAGGGAGACTTTGCTTGGAATCTTACGTGATCAGATCTCTGAGCCACTGCGAGCACAAATAACAGGAGCTCCTTTGGAAGATGCACGCCACCTCACCCACAACTATGACAAACTTCGTCAAGAAGTAGAAGGCCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTCTTTCTGCAGAGACTTCCATGAGGCTTCAGAATGCAGAAAAAAGGTTGAAAGACCATAAATCTTCCTTGGTGGCACTTGGCAGAGAAGCAACTTCTGCTATGTCGTCAGTTGAAGAACAGCAACAGCATATAACTCTCCAGAGCCTTTCTACAATGGTGGATGCTGAACGAACCTATCATCAGCATGCCCTTGTTATTCTAGATAAACTATATGCCGAGATGATCATTATTGAGGAGAGACAACCGAAAGACTCTACATCATTTCCATTGCCAAAAGATGGACATAATCAACCTGCAGATGAGAAAGCTAATTCAAATGGCATTGATGATAAACACAACACCCAAATGGGCACGTACTTTTTCGCTAAGGTCATACACCCATTTGACGCTCAAGCTGAAGGGGAGTTAAATTTATCAGTTGACGATTATGTTGTAGTCCGTCAGGTTGCTGCCAATGGATGGTCTGAAGGAGAATACAATGGCAATGCTGGATGGTTTCCCTCGGCATATGTACAGAGACAGGACGTAGTACCAGCGAACAAGATACCAGAATAA 1101 0.4251 MDAIRKQASRLREQVAKQQQTILRQLGQLSNEPLMADESELECYHKLQKLYTSTKTAKHFQRHIVRGIEGFISVSSKQMEIVRKLAKDCCKYGTENEKHDSNYPLASASLQFGNSYDILENERETLLGILRDQISEPLRAQITGAPLEDARHLTHNYDKLRQEVEGQAAEVLRRRSKLRDSSLSAETSMRLQNAEKRLKDHKSSLVALGREATSAMSSVEEQQQHITLQSLSTMVDAERTYHQHALVILDKLYAEMIIIEERQPKDSTSFPLPKDGHNQPADEKANSNGIDDKHNTQMGTYFFAKVIHPFDAQAEGELNLSVDDYVVVRQVAANGWSEGEYNGNAGWFPSAYVQRQDVVPANKIPE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01601 366 Pfam Variant SH3 domain 306 354 IPR001452 GO:0005515
Trre9g01601 366 Gene3D Arfaptin homology (AH) domain/BAR domain 42 264 IPR027267 -
Trre9g01601 366 SMART SH3_2 302 357 IPR001452 GO:0005515
Trre9g01601 366 PANTHER SH3 DOMAIN-CONTAINING 17 355 - -
Trre9g01601 366 Coils Coil 1 21 - -
Trre9g01601 366 ProSiteProfiles Src homology 3 (SH3) domain profile. 299 358 IPR001452 GO:0005515
Trre9g01601 366 MobiDBLite consensus disorder prediction 264 293 - -
Trre9g01601 366 SUPERFAMILY BAR/IMD domain-like 46 256 IPR027267 -
Trre9g01601 366 Coils Coil 150 170 - -
Trre9g01601 366 Gene3D SH3 Domains 285 364 - -
Trre9g01601 366 Coils Coil 191 211 - -
Trre9g01601 366 SUPERFAMILY SH3-domain 301 360 IPR036028 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01601 Trre-Chr9 13992442 13996257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01601 - - tpra:123907560 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01601 9 13992442 13996257 Trre9g01601 9 13992442 13996257 ECH