Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03634 ATGGCTCTGTTTCTTCAAACGCATTACCCTCTACGCTCACTGCGTAACCCTTATCACTTCCCAAACCCTTATAATCCCTTTCTCATACTCCCCGCCACTTCCACCAAATCCCTTTTGCCATACCATGCCGCAATTTCATTATCCGCTCGCCGCACTCCTTCACGCCGTTCGCCGCCCTCGCCCACTGCCTCCGCTTCCCACCGCCACCCACCTCCACAAACGCCACCTCTCAAGGCTTTTGCGGGCCTCGCCGCCTCCGCCGTGCTGTTTCTCTGCCTCGGCGTTCGCCTGTGCTTGGCATCTTCTCCGCCGCTGCCGTCTCTACCCGCCGGTCCTCCTGCAGTTCAGGAGGAGCAAACTGTTCAAGGTTTCTTAGAAGCCGAGCCTCTCTACTCTCTCATATGTTATTATGATCATGATGGAAGAAAACAAGAAGGCAGAGAAACTGTAGTAGATAAAGAATTAGAAGAAGCTTTTAATGCCTGGAAATCTAAAACATTTGCATTGACTGTTCCCCTGAAAGTTGTTGCTCTACGTGGTTCTATACCTCCTTCATGGATCAAGGACTTCATAAATTCTCAAGGGAGGAGAATGAAGTTTAACGTGAAGTATTATGCAAGTCTTGAGAGCATCTTTTCTGATCTATCAATTCCCTTTACTAAAGGAAAAATTAACCCAGGATCTGCTTTGGCAGCAGATATTGTTGGTATTGGTGATTCATGGCTCAAACTTGCTATTAACAAAGCTATAATTGAGCCAATACGAGATGTAGAAGATCAGGAGTGGTTTAAAAGCTTAAATGACAAATGGAAGGTATACCTACGCAGGAACTCTGAGGGAGAAATAGATCCTAAAGGTGATATATGGGCTGCTCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAACAAATTTCAAGAGCATAAGTTGGATCCTGTAGAGGATTGGGCAGATCTTTGGCGGCCTGATCTTGCCGGGAGGATTTCGATGGTTGATTCTCCTAGAGAAGTTGTTGGTGCAGTTTTGAAGTATATGGGTACTTCCTATAATACAAATAACATCAATGCTGAAGTTAACGGTGGGAGAGATGCTGTTAAACATAATTTGACTTTGCTTGCAAAACAGGTTCGACTGTTTGATAGTTCAAACTATTTAAAAGCTTTTGGAGTTGGAGACGTGTGGGTAGCTGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAACGCCTGTCTAATGTTGCTGTTGTTGTTCCAAAGTCTGGAGCGAGCTTATGGGCAGATCTTTGGGCAGTTCCGGCTGCTTCTAGAATTGCAACAAATCAGATTGGCGGACGTATTAGGGGACCGTCACCATTAATCCATCAGTGGATAGAGTTTTGTCTGCAATCTGCAAGAGCACTGCCCTTTAAGCAAGAGGTGATCCCAGGTGCCTCTCCCTCACATATTCAAGGTCATTCAGCCAATGTGCCCATCGAGTTAACCAATGGTAGGCCGAAGCTAAAGGGTAACCTGGTTGATGGAGCACCTCCACCAGACATCTTAGAAAGATGTGAGTTTCTAGAGCCACTATCTAATTCAACACTCTCAGATTACCATTGGTTGATTACATCTATCCAGGAACCTGGCCATGGATTGATACATAAAATGTATCAGAATATCATATCAGTGGCTAAATTTTCTGAGTGGTCTAATTCAAAGCTTACTTGA 1713 0.4489 MALFLQTHYPLRSLRNPYHFPNPYNPFLILPATSTKSLLPYHAAISLSARRTPSRRSPPSPTASASHRHPPPQTPPLKAFAGLAASAVLFLCLGVRLCLASSPPLPSLPAGPPAVQEEQTVQGFLEAEPLYSLICYYDHDGRKQEGRETVVDKELEEAFNAWKSKTFALTVPLKVVALRGSIPPSWIKDFINSQGRRMKFNVKYYASLESIFSDLSIPFTKGKINPGSALAADIVGIGDSWLKLAINKAIIEPIRDVEDQEWFKSLNDKWKVYLRRNSEGEIDPKGDIWAAPYRWGCMVIAYKTNKFQEHKLDPVEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGTSYNTNNINAEVNGGRDAVKHNLTLLAKQVRLFDSSNYLKAFGVGDVWVAVGWSSDIIPAAKRLSNVAVVVPKSGASLWADLWAVPAASRIATNQIGGRIRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPSHIQGHSANVPIELTNGRPKLKGNLVDGAPPPDILERCEFLEPLSNSTLSDYHWLITSIQEPGHGLIHKMYQNIISVAKFSEWSNSKLT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03634 570 SUPERFAMILY Periplasmic binding protein-like II 173 438 - -
Spst3g03634 570 CDD PBP2_PotD_PotF_like_1 172 538 - -
Spst3g03634 570 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 81 540 - -
Spst3g03634 570 Pfam Bacterial extracellular solute-binding protein 232 466 - -
Spst3g03634 570 Gene3D - 296 444 - -
Spst3g03634 570 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 316 330 IPR001188 GO:0015846|GO:0019808|GO:0042597
Spst3g03634 570 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 287 303 IPR001188 GO:0015846|GO:0019808|GO:0042597
Spst3g03634 570 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 334 353 IPR001188 GO:0015846|GO:0019808|GO:0042597
Spst3g03634 570 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 420 439 IPR001188 GO:0015846|GO:0019808|GO:0042597
Spst3g03634 570 MobiDBLite consensus disorder prediction 49 76 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03634 - - gmx:100781794 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03634 3 86376427 86381642 Spst3g03634 3 86376427 86381642 ECH