Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0875 ATGCCTCAAGAGCAGCTGGGGTCCATTCGGCGCTTGTCAAGAAGGCGCTCCTTAAGGTCTGGGGCAGGTACGGATGATAGGGGGTGGACCTCACTTCATGTTTACGCTCGCAAAGGGGATCTTAAATTGGTTAAAAAGCTTATTGACGAAGGAATGGATGTAAATGTTGTTGCATGGGGTCCAAAATCAAAAGGTGTGACCCCGCTTCATCTTGCTGCTGAAGGTGGGCACCTTGAAGTCATGGATGAATTACTTGAGCGTGGTGCTAACATTGATGCCAGGACTAAGGGTGCTTGTGGCTGGACACCTCTCCACATTGCTGCTAAAGAAAGGAGGAGGGCTGCGGTGAAATTCCTAATAGAGAATGGAGCATTTTTACCTCCTGATATCAATGATTGCAGATTTAATCCCCCAGTTCATTACTGCTCAGGACTTGAATGGGCCTATGAGGAAATGAAGCTTCATTATGAAGACTCGATATCATCTGGGGAGACCTCTAGCAGCTCAGAAAGCTGA 516 0.4748 MPQEQLGSIRRLSRRRSLRSGAGTDDRGWTSLHVYARKGDLKLVKKLIDEGMDVNVVAWGPKSKGVTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTPLHIAAKERRRAAVKFLIENGAFLPPDINDCRFNPPVHYCSGLEWAYEEMKLHYEDSISSGETSSSSES 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0875 171 ProSiteProfiles Ankyrin repeat region circular profile. 27 56 - -
Lele50g0875 171 PRINTS Ankyrin repeat signature 115 129 IPR002110 GO:0005515
Lele50g0875 171 PRINTS Ankyrin repeat signature 65 80 IPR002110 GO:0005515
Lele50g0875 171 SUPERFAMILY Ankyrin repeat 24 143 IPR036770 -
Lele50g0875 171 PANTHER MOLTING PROTEIN MLT-4 33 143 - -
Lele50g0875 171 MobiDBLite consensus disorder prediction 1 25 - -
Lele50g0875 171 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Lele50g0875 171 Gene3D - 9 60 IPR036770 -
Lele50g0875 171 ProSiteProfiles Ankyrin repeat region circular profile. 99 124 - -
Lele50g0875 171 ProSiteProfiles Ankyrin repeat profile. 99 124 IPR002110 GO:0005515
Lele50g0875 171 SMART ANK_2a 27 56 IPR002110 GO:0005515
Lele50g0875 171 SMART ANK_2a 64 93 IPR002110 GO:0005515
Lele50g0875 171 SMART ANK_2a 99 132 IPR002110 GO:0005515
Lele50g0875 171 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Lele50g0875 171 Pfam Ankyrin repeats (3 copies) 32 124 IPR002110 GO:0005515
Lele50g0875 171 Gene3D - 61 164 IPR036770 -
Lele50g0875 171 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0875 Lele-ChrLele50 5518084 5519653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0875 31 149 Acyl Lipid Metabolism Gene Families AT5G53470 33.613 6.04e-13 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0875 50 5518084 5519653 Lele50g0875 50 5518084 5519653 ECH
Lele50g0875 50 5518084 5519653 Lele51g0858 51 5267819 5270338 hybridization
Lele50g0875 50 5518084 5519653 Lele52g0859 52 5563360 5564953 hybridization