Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0871 ATGGATGCTATAAGAAAGCAAGCTAGCAAATTAAGGGAGCAAGTTGCTAAGCAGCAGCAGGCTATACTTAGACAATTAGGCCAAATTAGCAATGAACCTCTAATAACGGATGAATCAGAAGTTCAATGTCACCAACAACTGAGAAAATTATACAATTCTACAAAAGCAGCCAAGAATTTTCAGCGGCATATTGTCCGTGGTATTGAAGGTTTAACCTCTGTTAGTTCAAAGCAGATGGATATAGTAAGGAAGTTAGCTAAAGACTGTTGTAAGTATGGGACTGAGAATGAAAGCAGTCCTTATCCTCTTGCAAGGGCTTCTCTTCACATGGCTAACTCGCATGATTTAATGGAAAATGAAAGGGAGACTTTGCTTGCAATCTACAGTCATCGGGTCTCTGAGCCATTACGGGCTCAAATTACAGGAGCTCCTTTAGAGGATGCACGCCACCTCACTTATCGCTATGATAAACTTTTTCAAGAGGTAGAAGCTCAGGCTGCTGAAGTTTTGAGGCGTCAATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGAGAACTCCATGAAGCTTCAAAATGCTGAGGCAAGGTTGAAAGAACTTAAATCAGCTTTGGTGGCACTTGGTAGAGAAGCAACTGCTGCCATGGTGTCAGTTGAAGATGAACAACAGCAGATAACTCTCAAGAGCCTTCGTACAATGGTGGATGCTGAGAGAGGTTATCACGAGCATGCCCTTGTTATTTTAGAGAAGCTCTATTCTGAGATGATTCTGGAGAAGCAATCAAAAGAGTCTCCTTCCATTCCAGTGCCAAGACATGGATATAATCAACCTGTATCTGAGAATGCTAATCTAAATGGTTCTGATCATCGAAGCAATGATTCGACGAGCACCTATTATTTTGCAAAGGCAAGTCATGTGGTACACCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGTTTATCAGTTGACGATTATGTCATAGTTCGACAGGTATCTCCACATGGATGGTCTGAAGGAATATGCAAAGGCAATGCTGGGTGGTTTCCGTCTGCATATGTAGAGAGAGAGGAGAAAATACCAGCGAGCATGATAATGGAAGAAATAACATCATCAACATCTTGA 1119 0.4182 MDAIRKQASKLREQVAKQQQAILRQLGQISNEPLITDESEVQCHQQLRKLYNSTKAAKNFQRHIVRGIEGLTSVSSKQMDIVRKLAKDCCKYGTENESSPYPLARASLHMANSHDLMENERETLLAIYSHRVSEPLRAQITGAPLEDARHLTYRYDKLFQEVEAQAAEVLRRQSKLRDSSVSAENSMKLQNAEARLKELKSALVALGREATAAMVSVEDEQQQITLKSLRTMVDAERGYHEHALVILEKLYSEMILEKQSKESPSIPVPRHGYNQPVSENANLNGSDHRSNDSTSTYYFAKASHVVHPFDAQAEGELSLSVDDYVIVRQVSPHGWSEGICKGNAGWFPSAYVEREEKIPASMIMEEITSSTS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0871 372 Gene3D Arfaptin homology (AH) domain/BAR domain 35 265 IPR027267 -
Lele50g0871 372 Coils Coil 182 209 - -
Lele50g0871 372 PANTHER SH3 DOMAIN-CONTAINING 18 354 - -
Lele50g0871 372 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Lele50g0871 372 Coils Coil 1 21 - -
Lele50g0871 372 MobiDBLite consensus disorder prediction 261 290 - -
Lele50g0871 372 Gene3D SH3 Domains 285 370 - -
Lele50g0871 372 SMART SH3_2 301 356 IPR001452 GO:0005515
Lele50g0871 372 SUPERFAMILY SH3-domain 304 359 IPR036028 GO:0005515
Lele50g0871 372 Pfam Variant SH3 domain 305 353 IPR001452 GO:0005515
Lele50g0871 372 MobiDBLite consensus disorder prediction 275 290 - -
Lele50g0871 372 ProSiteProfiles Src homology 3 (SH3) domain profile. 293 357 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0871 Lele-ChrLele50 5488538 5492723 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0871 50 5488538 5492723 Lele50g0871 50 5488538 5492723 ECH
Lele50g0871 50 5488538 5492723 Lele51g0855 51 5244195 5249479 hybridization
Lele50g0871 50 5488538 5492723 Lele52g0856 52 5536824 5541004 hybridization