Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02430 ATGTCCAACACTATTATCTCTCTACCTTCACCACGTTACTCTTATCTCTTCTCAATTCCAATTCCAAACCCTAAATCTAACCCCTCTCTTCTAATCCTCACCAAACATCCCAAATCACAATTCCAATCCTCCCCTTACCGGACTCCGATACACCGTTCGCCGCCGCCGTCATCCATCTCCGTCTCCCTACGGGAACATTCACAGACGTCGCCGTTCAAGTTGCCACAGGCTCTCGTCAGTATCGCCGTCTCCGCTGCACTGTTTCTCTGCTGTGGCATTCGCGCTTGTTCCGCTTCTTTGCCTCCTCTCACCACCACCGTAGTTCAGCAGGAACAAACTATTCAAGATGATAATGATGCAAGGAAACTTGATGACAATGAAAGTATAGATATAGTAGATAAGGAATTAGAAGCGTCTTTTAATGCTTGGAAGTCTAAAACGTATGCATTGACTGTTCCTTTAAAAGTCGTTGCTTTGCGTGGCTCTATTCCTCCTTCATGGATCAAGGACTTCATAAATTCTCAAGGGAAAAGAATGAAGTTTAAAGTGAAGTATCATGAAAGTCTTGAGAGTATCTTCTCTGATCTATCCATTCCCTTTACTAAAGAAAATCATGGCCCAACGTCTACCTTGGGAGCTGATATTGTTGGTATTGGTGATTCTTGGCTCAATTTTGCCATTAAAAAAGCGATAATTGAACCAATAAAGGATGTAGAAGATCAGGAATGGTTTAAAAGTTTAGCTGAGAAATGGAAGGTATATTTACGCAGGAACTCTGAGGGAGAAATGGATCCTGAAGGTGATATATGGGCTGCCCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATCAATTTCAAAATCATAAGTTGGCTCCAATAGAGGACTGGACAGATCTGTGGCGGCCTGATCTGGCAGGGAGGATTTCCATGGTGAATTCTCCTAGAGATGTTGTTGGTGCAGTCTTAAAGTATATGGGGGCTTCCTATAATGTAAATGACATCAATTTAGAAGTAAATGGTGGGAGAGATGCTGTTAAGCATAATTTAGCATTGCTTGCAAAACAGGTTCGACTGTTTGACAGTGAAAACTATCTAAAGGCTTTTGGAGTTGGAGATGTGTGGGTAGCTGTTGGGTGGAGTAGTGATATTATTCCTGTTGCTAAACGCATGTCTAATGTTGCAGTTATTGTTCCAAAGTCTGGAGCGAGTTTATGGGCAGATCTTTGGGCAATTCCTGCTGCCTCTAGGATTCAAACGAGTAAGCTTGGTGGACGCGTTAGGGGACCATCCCCATTAATTCATCAGTGGATAGAGTTCTGTCTGCAATCTGCAAGAGCACTTCCCTTTAAGCAGGAGGTGATCCCCGGTGCCTCTCCCCCTCTTCTTCAAGGTCATTCCACCAATGTTCCCTTGGAGTTGACCAAGGGTAGGCCAAGGCTAGACACCAATCTCATTGACGGAGCACCACCACCTGGAATTTTAGAACGGTGCGAATTTCTAGAGCCATTATCTAATTCAGCAGTGTCAGATTACCACTGGTTACTTGCCTCAATCCAGGAACCTAGCAATGGATTGATACACAAAATTCGTCAGTATATCTCATCTTTGGTTACTGGTGGGTTTAATTCAAAGCTGACTTGA 1650 0.4358 MSNTIISLPSPRYSYLFSIPIPNPKSNPSLLILTKHPKSQFQSSPYRTPIHRSPPPSSISVSLREHSQTSPFKLPQALVSIAVSAALFLCCGIRACSASLPPLTTTVVQQEQTIQDDNDARKLDDNESIDIVDKELEASFNAWKSKTYALTVPLKVVALRGSIPPSWIKDFINSQGKRMKFKVKYHESLESIFSDLSIPFTKENHGPTSTLGADIVGIGDSWLNFAIKKAIIEPIKDVEDQEWFKSLAEKWKVYLRRNSEGEMDPEGDIWAAPYRWGCMVIAYKTNQFQNHKLAPIEDWTDLWRPDLAGRISMVNSPRDVVGAVLKYMGASYNVNDINLEVNGGRDAVKHNLALLAKQVRLFDSENYLKAFGVGDVWVAVGWSSDIIPVAKRMSNVAVIVPKSGASLWADLWAIPAASRIQTSKLGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPPLLQGHSTNVPLELTKGRPRLDTNLIDGAPPPGILERCEFLEPLSNSAVSDYHWLLASIQEPSNGLIHKIRQYISSLVTGGFNSKLT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02430 549 Pfam Bacterial extracellular solute-binding protein 213 448 - -
Trre15g02430 549 Gene3D - 277 426 - -
Trre15g02430 549 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 78 521 - -
Trre15g02430 549 SUPERFAMILY Periplasmic binding protein-like II 154 419 - -
Trre15g02430 549 MobiDBLite consensus disorder prediction 40 62 - -
Trre15g02430 549 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 401 420 IPR001188 GO:0015846|GO:0019808|GO:0042597
Trre15g02430 549 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 357 376 IPR001188 GO:0015846|GO:0019808|GO:0042597
Trre15g02430 549 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 268 284 IPR001188 GO:0015846|GO:0019808|GO:0042597
Trre15g02430 549 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 297 311 IPR001188 GO:0015846|GO:0019808|GO:0042597
Trre15g02430 549 CDD PBP2_PotD_PotF_like_1 153 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02430 Trre-Chr15 20184621 20188201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02430 - - gmx:100781794 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02430 15 20184621 20188201 Trre15g02430 15 20184621 20188201 ECH