Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1091 ATGGATGCTATAAGGAAGCAAGCTAGTAGATTGAGGGAACAAGTTGCCAAGCAACAACAGTCTATACTTAGACAGTTGGGCCAACTTAGCAATGAACCACTCATGGCTGATGAATTTGAACTTGAATGTTTTCATAAACTTCAAAAGTTATACACTTCTACAAAGACTGCTAAGCATTTTCAGCGGCATATAGTTCGGGGCGTTGAAGGATTAATTTCTGTTAGTTCTAAGCAGATGGAGATAGTGAGGAAGTTGGCCAAGGACTGTTGTAAGTATGGGAATGAGAATGAGAATCAAGGTAGTACTTACCCCCTTGCAAGGGCTTCTCTTCAATTCGGTAACTCATACGAAATATTGGAAAATGAAAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGATCTCTGAGCCACTGCGAGCACAAATAACAGGAGCTCCTTTGGAAGATGCACGCCACCTCACCCACAACTACGACAAACTTCGTCAAGAAGTAGAAGGCCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTCTTTCTGCAGAGAGTTCCATGAGGCTTCAGAATGCAGAAAAAAAGTTGAAAGAGCATAAATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACTGCTGCTATGTCTTCAGTTGAGGAACAACAGCAACATATAACTCTCCAGAGCCTTTCTACAATGGTGGACGCTGAGAGAGCTTTTCACCGGCATGCCCTTGTTATTCTAGATAAACTACATGCTGAGATGATCATGATTGATGAGAGACAACCACAAGACTCTACATCATTTCCACTGCCAAAAGAGGAACATAATCAACCTGCAAATCAGAAAGCTAATTCAAATGGCATTGGTTATAAACACAACACCCAAACGGGCACATACTTTTTTGCAAAGGTCATACATCCATTTGATGCTCAAGCTGAAGGGGAGTTAAGTTTATCAGTTGACGATTATGTTGTAGTCCGTCAGGTTGCTGCCAATGGATGGTCTGAAGGAGAATTCAATGGCAATGCTGGATGGTTTCCCTCTGCTTATGTGCTGAGACAGGACGTAGTACCAGCGAACAAGATACCGGAATAA 1101 0.4287 MDAIRKQASRLREQVAKQQQSILRQLGQLSNEPLMADEFELECFHKLQKLYTSTKTAKHFQRHIVRGVEGLISVSSKQMEIVRKLAKDCCKYGNENENQGSTYPLARASLQFGNSYEILENERETLLGILGDQISEPLRAQITGAPLEDARHLTHNYDKLRQEVEGQAAEVLRRRSKLRDSSLSAESSMRLQNAEKKLKEHKSALVALGREATAAMSSVEEQQQHITLQSLSTMVDAERAFHRHALVILDKLHAEMIMIDERQPQDSTSFPLPKEEHNQPANQKANSNGIGYKHNTQTGTYFFAKVIHPFDAQAEGELSLSVDDYVVVRQVAANGWSEGEFNGNAGWFPSAYVLRQDVVPANKIPE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1091 366 Coils Coil 150 170 - -
Mtr5g1091 366 Coils Coil 1 21 - -
Mtr5g1091 366 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 1 1 364 - -
Mtr5g1091 366 SMART SH3_2 302 357 IPR001452 GO:0005515
Mtr5g1091 366 SUPERFAMILY BAR/IMD domain-like 47 256 IPR027267 -
Mtr5g1091 366 ProSiteProfiles Src homology 3 (SH3) domain profile. 299 358 IPR001452 GO:0005515
Mtr5g1091 366 Gene3D SH3 Domains 302 356 - -
Mtr5g1091 366 MobiDBLite consensus disorder prediction 265 287 - -
Mtr5g1091 366 Coils Coil 184 211 - -
Mtr5g1091 366 Pfam Variant SH3 domain 306 353 IPR001452 GO:0005515
Mtr5g1091 366 Gene3D Arfaptin homology (AH) domain/BAR domain 42 277 IPR027267 -
Mtr5g1091 366 PANTHER SH3 DOMAIN-CONTAINING 1 364 - -
Mtr5g1091 366 SUPERFAMILY SH3-domain 302 358 IPR036028 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1091 Mtr-Chr5 10877788 10883289 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1091 - - mtr:MTR_5g026400 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1091 5 10877788 10883289 Mtr5g1091 5 10877788 10883289 ECH