Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00948 ATGGATGCTATAAGGAAGCAAGCAAGCAAGTTAAGGGAGCAAGTTGCCAGACAACAGCAGGCCATACTTAGACAGTTGGGCCAAATTAGCAATGAAAAGCTGATGACTGATGAATCTGAAATTGAATGTCACCAGCAGCTTCAAAAGTTATACACTTCTACAAAGACAGCTAAGCATTTTCAGCGGCATATTGTTCGTGCTATTGAAGGGTTCATCTCTGTTAGCTCCAAGCAGATGGAGATAGTGAGGAAGTTAGCTAGAGAATGCTGTAGGTACGGAACCGAGAATCTTGGTAGTAGTTATCCACTTGCAAGGGCTTCTCTTCAATTTGGTAACTCGTATGATATAATGGAAAATGAGAGGGAGACTTTGCTCGGGATCTTCGGTGATCAGATCTCTGAGCCACTGCGAGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCATCTCACTCACCGGTATGATAAACTTCATCAAGAAGTAGAAGCACAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTGCAGAGAGTTCTGTGAGGCTTCAAAATGCAGAAACAAGGTTGAAAGAACTTAAATCTGCCTTGGCGGCACTTGGTAAAGAAGCAACTGCTGCTATGTTGTCCGTTGAAGAACAACAGCAACAGACCACTCTCCAGAGCCTTCGGAAAATGGTGGATGCTGAGAGAGCCTATCATCAGCATGTCCTTATTATTCTAGAGAAAGTATATGCCGAGATAATTGAGGAGAGACAACCAAAAGAGGCTACAACTTTTCCACTGCCAAGAGATGGACATAATCAACCTGCAGATGAAATTGATGCTTCAAATGGCATTGATTATAAACACGACAGTCAAACAGGCACATACTTTTTTGCAAAGGTTGTACATCCATTTGATGCTCAGGCTGAGGGGGAGTTAAGCCTATCAATTGATGATTTTGTTGTAGTTCGTCAGGTTGGTCCCAATGGATGGTCTGAAGGAGAATGTAAAGGCAATGCTGGATGGTTTCCCTCTGCTTATGTACAGAGACAGGACTTGATACCAGCCAGCAAGGTAACAGAATAA 1089 0.4353 MDAIRKQASKLREQVARQQQAILRQLGQISNEKLMTDESEIECHQQLQKLYTSTKTAKHFQRHIVRAIEGFISVSSKQMEIVRKLARECCRYGTENLGSSYPLARASLQFGNSYDIMENERETLLGIFGDQISEPLRAQITGAPLEDARHLTHRYDKLHQEVEAQAAEVLRRRSKLRNSSVSAESSVRLQNAETRLKELKSALAALGKEATAAMLSVEEQQQQTTLQSLRKMVDAERAYHQHVLIILEKVYAEIIEERQPKEATTFPLPRDGHNQPADEIDASNGIDYKHDSQTGTYFFAKVVHPFDAQAEGELSLSIDDFVVVRQVGPNGWSEGECKGNAGWFPSAYVQRQDLIPASKVTE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00948 362 PANTHER SH3 DOMAIN-CONTAINING 18 351 - -
Lapu2g00948 362 SUPERFAMILY SH3-domain 298 354 IPR036028 GO:0005515
Lapu2g00948 362 Coils Coil 1 21 - -
Lapu2g00948 362 SMART SH3_2 298 353 IPR001452 GO:0005515
Lapu2g00948 362 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Lapu2g00948 362 Coils Coil 182 209 - -
Lapu2g00948 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Lapu2g00948 362 Gene3D Arfaptin homology (AH) domain/BAR domain 25 265 IPR027267 -
Lapu2g00948 362 SUPERFAMILY BAR/IMD domain-like 42 253 IPR027267 -
Lapu2g00948 362 Coils Coil 159 179 - -
Lapu2g00948 362 MobiDBLite consensus disorder prediction 263 283 - -
Lapu2g00948 362 Gene3D SH3 Domains 298 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00948 Lapu-Chr2 8796221 8803124 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00948 - - gmx:100816554 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00948 2 8796221 8803124 Lapu2g00948 2 8796221 8803124 ECH