Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1102 ATGCTTCAGGAGAGGCCAATTTCGTTGCGACAAAGTTCTTCGAGAAGGAGGTTGTTGAGGCCTGGGGTTGATACTGATGATAGAGGTTGGACCTCACTTCATGTTTATGCAAGGAAAGGTGATATTAAGCTAGTAAAAAGGCTTCTCAACGAAGGAATGGATGTTAATGTGACTGCATGGGGCCCTAAATCTAAAGGTGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCATCTTGGAGTGATGGATGAACTGCTTGAGCGTGGTGCCAATATCGATGCCAGAACTAAGGGTGCTTGTGGCTGGACACCGCTCCATATTGCAGCTAAAGAGAGGAATAGGGATGCTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACCGGATATCAATGATAGCAGATTTAATCCTCCTCTTCATTATTGCCCAGGACTTGAATGGGCCTATGAGGAAATGAAGAGACTTCGACAGGAAGAATTATCTCCGGAGGACACATCTTGCAGCTCTGAAAATTAA 519 0.4605 MLQERPISLRQSSSRRRLLRPGVDTDDRGWTSLHVYARKGDIKLVKRLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQEELSPEDTSCSSEN* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1102 172 Pfam Ankyrin repeat 100 125 IPR002110 GO:0005515
Mtr5g1102 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Mtr5g1102 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Mtr5g1102 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Mtr5g1102 172 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 6 171 - -
Mtr5g1102 172 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 6 171 - -
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Mtr5g1102 172 Pfam Ankyrin repeats (3 copies) 17 95 IPR002110 GO:0005515
Mtr5g1102 172 SUPERFAMILY Ankyrin repeat 25 143 IPR036770 -
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Mtr5g1102 172 Gene3D - 62 160 IPR036770 -
Mtr5g1102 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Mtr5g1102 172 Gene3D - 4 61 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1102 26 141 Miscellaneous Gene Families AT5G02620 35.043 8.01e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1102 - - aprc:113868977 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1102 5 10951369 10954256 Mtr5g1102 5 10951369 10954256 ECH