Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0856 ATGGATGCTATAAGAAAGCAAGCTAGCAAATTAAGGGAGCAAGTTGCCAAGCAGCAGCAGGCTATACTTAGACAATTAGGCCAAATTAGCAATGAACCGCTACTAACGGATGAATCAGAAGTTCAATGTCACCAACAACTGAGGAAATTATACAATTCTACAAAAGCAGCCAAGAATTTTCAGCGGCATATTGTCCGTGGTATTGAAGGTTTAACCTCTGTTAGTTCAAAGCAGATGAATATAGTAAGGAAGTTGGCTAAAGACTGTTGTAAGTATGAGACTGAGAATGAAAGCAGTCCTTATCCTCTTGCAAGGGCCTCTCTTCACATGGGTAACTCATATGATTTAATGGAAAATGAAAGGGAGACTTTGCTTGCAATCTACAGTCATCAGGTCTCTGAGCCATTACGGGCACAAATTACAGGAGCTCCTTTAGAGGATGCACGCCACCTCACTTATCACTATGACAAACTTTTTCAAGAGGTAGAAGCTCAGGCTGCTGAAGTTTTGAGGCGCCGATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGAGAACTCCATGAAGCTTCAAAATGCTGAGGCAAGGTTGAAAGAACTTAAATCAGCCTTGGTGGCACTTGGTAGAGAAGCAACTGCTGCCATGGCGTCAGTTGAAGATGAACAACAGCAGATAACTCTCAAGAGCCTTCGTACAATGGTGGATGCTGAGAGAGCTTATCACGAGCATGCCCTTGTTATTTTAGAGAAGCTATATTCTGAGATGATTCTGGAGAAGCAATCAAAAGAGTATCCTTCCATTCCAGTGCCAAGAGAGGGATATAATCAGCCTGTATCTGAGAATGCTAATCTAAATGGTTTTGATCATCGAAGCAATGATTCGACGAGCACCTATTATTTTGCAAAGGTGGTACACCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGTTTATCAGTCGACAATTATGTCGTAGTTCGACAGGTATCTCCACATGGATGGTCTGAAGGAATATGCAAAGGTAATGCTGGGTGGTTTCCGTCCGCATATGTAGAGAGAGAGGAGAAAATACCAGCGAGCATGATAATGGAAGAAACAACATCATCAACATCTTGA 1110 0.4234 MDAIRKQASKLREQVAKQQQAILRQLGQISNEPLLTDESEVQCHQQLRKLYNSTKAAKNFQRHIVRGIEGLTSVSSKQMNIVRKLAKDCCKYETENESSPYPLARASLHMGNSYDLMENERETLLAIYSHQVSEPLRAQITGAPLEDARHLTYHYDKLFQEVEAQAAEVLRRRSKLRDSSVSAENSMKLQNAEARLKELKSALVALGREATAAMASVEDEQQQITLKSLRTMVDAERAYHEHALVILEKLYSEMILEKQSKEYPSIPVPREGYNQPVSENANLNGFDHRSNDSTSTYYFAKVVHPFDAQAEGELSLSVDNYVVVRQVSPHGWSEGICKGNAGWFPSAYVEREEKIPASMIMEETTSSTS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0856 369 SUPERFAMILY SH3-domain 297 355 IPR036028 GO:0005515
Lele52g0856 369 Coils Coil 159 179 - -
Lele52g0856 369 PANTHER SH3 DOMAIN-CONTAINING 18 351 - -
Lele52g0856 369 Coils Coil 182 209 - -
Lele52g0856 369 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Lele52g0856 369 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Lele52g0856 369 Gene3D Arfaptin homology (AH) domain/BAR domain 40 257 IPR027267 -
Lele52g0856 369 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Lele52g0856 369 Coils Coil 1 21 - -
Lele52g0856 369 Gene3D SH3 Domains 284 367 - -
Lele52g0856 369 SMART SH3_2 298 353 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0856 Lele-ChrLele52 5536824 5541004 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0856 52 5536824 5541004 Lele52g0856 52 5536824 5541004 ECH
Lele49g0837 49 5182997 5187218 Lele52g0856 52 5536824 5541004 hybridization
Lele50g0871 50 5488538 5492723 Lele52g0856 52 5536824 5541004 hybridization