Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0718 ATGGATGCTATACGGAAGCAAGCTAGCAAGTTGAGAGAGCAAGTTGCCAGGCAACAACAGGCTATACTTAGACAATTGGGCCAACTTAGCAATGAATCGCTCATGACTGATGAATCTGAAATTGAGTGTCATCAGCAACTGCAGAAGTTATACACTTCTACAAAGACAGCTAAGCATTTTCAGCGGCATATTGTTCGCGGTATTGAAGGATTCGTTGCTGTTAGTTCCAAGCAGATGGAGATAGTAAGAAAGTTGGCGAAGGACTTCTGTAAATATGGGACCGAGAATCAAGGCAGTACTTACCCTCTTTCAAGGGCTTCTATTCAATTGGGTAACTCGTATGATATAGTGGAGAATGAGAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGATTTCTGAGCCACTGCGGGCACAAATAACAGGAGCTCCTCTAGAGGATGCACGCCACCTCACTCACCGCTATGATAAACTTCGGCAAGAGGTAGAAGCGCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGACAGTTCTATGAGGCTTCAAAATGCAGAAACAAGGTCGAAAGAGCTTAAATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACAACCGCTATGTTGTCAGTTGAAGAACAACAGCAACAGATAACTCTCAAGAGCCTTTGTACAATGGTGGATGCAGAGAGAGCCTATCATCGTCATGCCCTTGTTATTCTAGAGAAACTATGTGCTGAGATGGTTGATGAGAGACAACCAAAAGAATCTACATCATTTCCTCTGCCAAAAGATGGACACAATCAACCTGCAGATGAGAATGCTAATTCAAACAGCATTGATTATAAACAACACAGTCAAACAGGCACATACTTTTTTGCAAAGGTAATACATCCATTTGATGCTCAAGCAGAGGGGGAGTTAAATCTATCAGTTGATGATTATGTTGTAGTTCGCCAGGTTGGTTCCAATGGATGGTCTGAAGGAGAATGCAAAGGAAACGCTGGATGGTTTCCCTCTGCTTATGTACAGAGACAGGACTTAATACCAGCCAGCAAGATAACGGAATAA 1089 0.4343 MDAIRKQASKLREQVARQQQAILRQLGQLSNESLMTDESEIECHQQLQKLYTSTKTAKHFQRHIVRGIEGFVAVSSKQMEIVRKLAKDFCKYGTENQGSTYPLSRASIQLGNSYDIVENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLRQEVEAQAAEVLRRRSKLRDSSVSADSSMRLQNAETRSKELKSALVALGREATTAMLSVEEQQQQITLKSLCTMVDAERAYHRHALVILEKLCAEMVDERQPKESTSFPLPKDGHNQPADENANSNSIDYKQHSQTGTYFFAKVIHPFDAQAEGELNLSVDDYVVVRQVGSNGWSEGECKGNAGWFPSAYVQRQDLIPASKITE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0718 362 MobiDBLite consensus disorder prediction 258 287 - -
Lja2g0718 362 Coils Coil 148 179 - -
Lja2g0718 362 Coils Coil 1 21 - -
Lja2g0718 362 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Lja2g0718 362 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Lja2g0718 362 Gene3D SH3 Domains 298 352 - -
Lja2g0718 362 SMART SH3_2 298 353 IPR001452 GO:0005515
Lja2g0718 362 PANTHER SH3 DOMAIN-CONTAINING 1 362 - -
Lja2g0718 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Lja2g0718 362 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 1 1 362 - -
Lja2g0718 362 Coils Coil 189 209 - -
Lja2g0718 362 SUPERFAMILY SH3-domain 298 354 IPR036028 GO:0005515
Lja2g0718 362 Gene3D Arfaptin homology (AH) domain/BAR domain 41 258 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0718 Lja-Chr2 6537842 6541638 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0718 - - gmx:100816554 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0718 2 6537842 6541638 Lja2g0718 2 6537842 6541638 ECH