Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1276 ATGCCGCAGGAGCAGACGGAGTCCTTAAGAAGGAGCTTTTCAAGAAGGCGCTTCTTAAGGTCTGAGGTAGATACGGATGACAGGGGGTGGACGCCTCTTCATGTTTGCTCTCGAAAAGGGGATCTCAAATTGGTTAAAAAACTTCTTGACGAAGGAATGGATGTAAATGTGGTTGCTTGGGGTCCAAAATCAAAGGGGGTGACCCCTCTTCACCTTGCTGCTGAAGGTGGCCACCTTAAAGTCATGGATGAATTGCTGGAACGTGGTGCTGACATTGATGCCAGGACCAAGGGTGCTTGTGGCTGGACACCACTCCACATTGCAGCTAAAGAAAAGAGAAGGGCAGTGGTGAAATACTTGGTAGAGAATGGGGCATTCTTGCCGCCTGATATCAGCGATTGCAGATTTAATCCCCCTCTTCATTATTGCCAAGGACTCGAATGGGCCTACGAGGAAATGAAGCGACTTCAATACGAAAGCTCTTTATCGGGGGATACCTCTTGCAGCTCAGAAAGCTGA 519 0.4875 MPQEQTESLRRSFSRRRFLRSEVDTDDRGWTPLHVCSRKGDLKLVKKLLDEGMDVNVVAWGPKSKGVTPLHLAAEGGHLKVMDELLERGADIDARTKGACGWTPLHIAAKEKRRAVVKYLVENGAFLPPDISDCRFNPPLHYCQGLEWAYEEMKRLQYESSLSGDTSCSSES 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1276 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Dere09g1276 172 Pfam Ankyrin repeat 100 125 IPR002110 GO:0005515
Dere09g1276 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Dere09g1276 172 Pfam Ankyrin repeats (3 copies) 19 95 IPR002110 GO:0005515
Dere09g1276 172 Gene3D - 63 166 IPR036770 -
Dere09g1276 172 SUPERFAMILY Ankyrin repeat 25 144 IPR036770 -
Dere09g1276 172 Gene3D - 3 62 IPR036770 -
Dere09g1276 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Dere09g1276 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Dere09g1276 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Dere09g1276 172 PRINTS Ankyrin repeat signature 29 44 IPR002110 GO:0005515
Dere09g1276 172 PRINTS Ankyrin repeat signature 81 95 IPR002110 GO:0005515
Dere09g1276 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Dere09g1276 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Dere09g1276 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Dere09g1276 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Dere09g1276 172 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 25 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1276 Dere-ChrDere09 16703903 16705878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1276 33 155 Acyl Lipid Metabolism Gene Families AT5G53470 33.333 6.07e-13 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1276 09 16703903 16705878 Dere09g1276 09 16703903 16705878 ECH