Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4440 ATGGCTCTGTTGCTGCAAACACATTACACACTCTCTATACCTTCACCACGTTACTCTTATCTCTTCTCAATTCCAAACCCTAACTCTAACCCATCTCTTCTAATCCTCGCCAAACATCCCAAATCCCAATTGCATTTCTTCAACCACCGGAGTCTAACACACCGTTCGCCGCCGTCATCAGTCTCCGCCTCCCGCCGAGAACCTTCTCAAACGACGCCGCTCAAGTTGCCCAATGCTCTCGTCAGTGTCGCCGTCTCTGCCGCGCTGTTTCTCTGCTGTGGCATTCGCGCTTGTTCGGCTTCTTTGCCTCCTTTAACCACCGTGGTTCAGCAGGAACAACAAACTATTCAAGATGATAATGATGCAAGGAAACTTGATGACAATGAAAATATAGATAAGGAATTAGAAGCATCTTTTAATGCTTGGAAGTCTAAAACATATGCATTGACAGTACCTTTGAAAGTTGTTGCTTTGCGTGGCTCTATTCCTCCTTCATGGATCAAGGACTTCATAAATTCTCAAGGGAAAAGAATGAAGTTTGAAGTGAAGTATCATGAAAGTCTTGAGAGTATCTTCTCTGATCTATCCATTCCCTTTACCAAAGAAAACCATGGCCCAACGTCTACTTTGGCAGCTGATATTGTTGGCATTGGTGATTCTTGGCTCAAATTTGCCATTCAAAAAGCGATAATTGAACCAATACAGGATGTAGAAGATAAGGAATGGTTTAAAAGTTTAGCTGAGAAATGGAAGGTATATTTACGCAGGAACTCTGAGGGAGAAATGGACCCCGAAGGTGATATATGGGCTGCCCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAATTTTCAAAAACATAAGTTGGCTCCAATAGAGGACTGGGCAGATCTGTGGCGGCCTGATCTTGCAGGGAGGATTTCCATGGTGAATTCTCCTAGAGATGTTGTTGGTGCAGTCTTAAAATATATGGGGGCTTCCTATAATGCAAATGACATCAATTTGGAAGTAAATGGTGGGAGAGATGCTGTTAAGCATAATTTAGCATTGCTTGCAAAACAGGTTCGACTCTTTGATAGTGAAAACTATCTAAAGGCTTTTGGAGTTGGAGATGTGTGGGTAGCTGTTGGATGGAGTAGCGATATTATTCCTGTTGCTAAACGCATGTCTAATGTTGCAGTTATTGTTCCAAAGTCCGGAGCAAGTTTATGGGCAGATCTTTGGGGAATTCCTGCTGCATCTAGGATTCAAACGAGTAAGCTTGGTGGACGCGTTAGGGGACCATCCCCATTAATCCATCAGTGGATAGAGTTCTGTCTGCAATCTGCAAGAGCACTTCCGTTTAAGCAGGAGGTGATCCCAGGTGCCTCTCCCCCTCTTCTTCAAGGTCATTCCACCAATGTGCCCTCTGAGTTGACCAAGGGTAAGCCAAGGCTAGACACCAATCTCATTGACGGAGCACCACCACCTGGAATTTTAGAAAGGTGCGAGTTTCTAGAGCCATTATCTAATTCAGCAGTGTCAGATTACCACTGGTTGCTTGCCTCAATCCAGGAACCTAGCAATGGATTGATACACAAAATTCGTCAGTATATCTCGTCTTTGGTTACTGGTGGGTTTAATTCAAAGCTGACTTGA 1647 0.4396 MALLLQTHYTLSIPSPRYSYLFSIPNPNSNPSLLILAKHPKSQLHFFNHRSLTHRSPPSSVSASRREPSQTTPLKLPNALVSVAVSAALFLCCGIRACSASLPPLTTVVQQEQQTIQDDNDARKLDDNENIDKELEASFNAWKSKTYALTVPLKVVALRGSIPPSWIKDFINSQGKRMKFEVKYHESLESIFSDLSIPFTKENHGPTSTLAADIVGIGDSWLKFAIQKAIIEPIQDVEDKEWFKSLAEKWKVYLRRNSEGEMDPEGDIWAAPYRWGCMVIAYKTNNFQKHKLAPIEDWADLWRPDLAGRISMVNSPRDVVGAVLKYMGASYNANDINLEVNGGRDAVKHNLALLAKQVRLFDSENYLKAFGVGDVWVAVGWSSDIIPVAKRMSNVAVIVPKSGASLWADLWGIPAASRIQTSKLGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPPLLQGHSTNVPSELTKGKPRLDTNLIDGAPPPGILERCEFLEPLSNSAVSDYHWLLASIQEPSNGLIHKIRQYISSLVTGGFNSKLT* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4440 548 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 73 532 - -
Tpr4g4440 548 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 73 532 - -
Tpr4g4440 548 SUPERFAMILY Periplasmic binding protein-like II 153 418 - -
Tpr4g4440 548 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 267 283 IPR001188 GO:0015846|GO:0019808|GO:0042597
Tpr4g4440 548 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 296 310 IPR001188 GO:0015846|GO:0019808|GO:0042597
Tpr4g4440 548 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 356 375 IPR001188 GO:0015846|GO:0019808|GO:0042597
Tpr4g4440 548 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 400 419 IPR001188 GO:0015846|GO:0019808|GO:0042597
Tpr4g4440 548 CDD PBP2_PotD_PotF_like_1 152 518 - -
Tpr4g4440 548 Gene3D - 276 425 - -
Tpr4g4440 548 Pfam Bacterial extracellular solute-binding protein 212 447 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4440 - - aprc:113857970 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4440 4 52084928 52088771 Tpr4g4440 4 52084928 52088771 ECH