Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2550 CTCGACGTTCCTCGTTTCCAAGGCGTGGATCCTCATGGATGGATCTTTAAGATCACTCAGTTTTTCACTTACCACCACACACCGGAGCACGAACGCATCACCGTTGCTTCCTTTTATTTGGACGGACCAGCGTTAGCGTGGTACCAATGGATGTTCAACAATGGGTATATCACTTCGTGGCCACAGTTTCTGCACGCTTTGGAACTCCGTTTTGCGCCTACAGCATACGACGACCCACGAGGTAAGCTGTTTAAGCTTCAACAAACTGATTCTGTTGCTAGTTACCTCAGCGAGTTTGAATCTCTTGCCAACCGAATTGTGGGTCTGTCACTCCACGATCTCCTCAGTTGTTTCATATCGGGGTTGAAATCTGAGATCCGCCGTGAGGTGTTGGCTCAACAACCGTCATCCCTATCGCAAGCTACAGGTCTTGCTAGGTTACAAGAAGAAAAGTTCCAGGATCTCTTGCGTTTGACAAAGACACGACCTTCGTCTTCGTGGCAAGCACCTTCCACTACCCGCACGATTTCCCCTTTCCCGGCGAAATCTGTTTCCGATTCTCCTCCACCAAAGACCGTCATGCCTCCCCTGTTACCCACACCCGTTCCCAAAACTCGCTACCGTCAATTATCAGCTTCTGAATTGGCCGAACGAAGAGAAAAGGGATTGTGCTTCAACTGCGACGAACGCTTTTCCCGTCATCACAAATGCAAAGCTCGTTTCCTTCTTTTGATTGCTGAAGAAGATGAAAGTGAGACGGAGGGATCTGGCCAGTCCAATTTCGGATCCCCAGACCAAATTATGGCTTTGTTCGACCCACCTGATGCGGCCCAGTTGGCCCAGTTGAGTTTTCATGCCATGTCAGGCACCCAGACGGCTCAAACAATCAAGGTTCTGGGAGGTGTGGCCCAACATTCGGTCCATGTATTAGTAGATGGAGGAAGTACCCTCAACTTCATTCAAACTCAGGTGGCACGTACTCTGGGATTGCAACACAGTTCATCACCAACTTTAAGAGTTATGGTTGGCAATGGGGATGAATTGACCAGTGCTCAGGTTTGTAAGGAGGTGCAAATCGAAATACAAGGTCATAGTTTTGTTGTAGACTTGTATACATTAAACCTCAGTGGACCAGATATTGTATTGGGTACCCCATGGCTCAAAACGTTAGGTCCAGTTTTAATGGACTATCAATCTCTTACTATGAAATTTCAGTATGGTGCCAAAGAGATTGTTTTACAAGGTGAAATAGGGCCATCTTACAATAATATTTCTTACCATCAATTGAAGAAATTGGTCCAACATGAGCCTACAGCACAGATTTTTTCTCTGCATATTCTTGATTCCGACGACTCTTCTTCCATATCAACATCTGAAAACCTTGGCCCCATTTTCATGGACCTCCTTCACCGCTACGCTCCATTATTTGATGAACCCACGTCCCTGCCACCATCCCGTTTTACTGATCATCAAATTCCTCTCAATCATAATGCTGTTCCAGTCAACGTGCGGCCGTATCGTTATCCGCATGCGCAGAAACAAGAAATAGAGTCTCAAATTCGTAAACTGCTTGAAAATGGGTGGATTCAACCTAGCAACAGCCCTTTTTCCTCTCCGGTGCTCCTCCTCAAGAAAAAAGATGGCACTTGGCGCATGATCGTTTTCCGTTACCCACTGTTGACGAGCTTTTGGATGAACTTGGATCCGCGAGAGTTTTTTCCAAGTTGGNAGCTTTCTAAACGGTATTATGGTCCTTATTTGGTCTTAGCCAAAGTTGGTCTTGTGGCTTACAAACTGGAGCTGCCCAGTCATTCTCGCATTCACAATGTATTCCATTCTTCTCTTTTGAAGCTTCATGAGGGAGTACCTCCGACTGTTATTGATCAAATTCCCCATGACTCAATTAACAATCACCATGTGGTTACTCCTTTGGCTGTACTGGAATTTCAGACAAGACTCATAGAGGGAATTTCCACGCGTTTCGCTCTGGTACCAGTTCTATCAGTAATTCAGTATGTTGTTGATAGTACAATATTACATTCCCTGACAAAGTTCCAGGTATATCTACGCAGGAACCGTGAGGGAGAAATGGATCCTGAAGGTGATGTATGGGCTGCCCCATATCGATGGGGTTGCATGGTAATAGCATACAAGACAAATAATTTTCAAAAGTATAAGTTGGCTCCTATAGAGGACTGGGCTGATCTGTGGCGGCCTGATCTTGCGGGGAGGATTTCCATGGTAGATTCTCCTAGAGAAGTTGTTGGTGCGGTATTAAAGTATATGGGGGCTTCCTATAATGCAAATGACATCAATTTGGAAGTTAATGGTGGGAGAGATGCAGTTAAACATAATTTAGCATTGCTTGCAAAACAGGTTCGACTCTTTGATAGTGAAAACTATCTAAAGGCTTTTGGAGTTGGAGATGTGTGGGTAGCTGTTGGATGGAGTAGCGATATTATTCCTGTTGCTAAACGCATGTCTAATGTTGCAGTTGTCGTCCCAAAGTCTGGAGCGAGTTTATGGGCAGATCTTTGGGCAATTCCTGGTGCCTCTCGGATTCAAACTAGTCAGATTGGTGGGCGCGTCAGGGGACCGTCCCCATTAATCCATCAGTGGATAGAGTTTTGTCTACAATCTGCTAGAGCACTTCCCTTTAAGCAGGAGGTGATTCCAGGTGCCTCTCCCCCTCTTCTTCAAGGTCATTCCGCCAATGTGTCCTTGGAGTTGACCAAGGGTAGGCCAAGGCTAGACACCAATCTCATTGATGGAGCACCACCACCTAACATTTTAGAAAGGTGTGAGTTTTTAGAGCCATTATCTAATTCAGCAGTATCAGATTACCACTGGTTGCTTGACTCAATTCAAAAACCTGGCAATGGATTGATACACACGGTGCGTCAGTATATCTCATCAGTGGTCTCATTTTCTGGATGA 2937 0.4549 LDVPRFQGVDPHGWIFKITQFFTYHHTPEHERITVASFYLDGPALAWYQWMFNNGYITSWPQFLHALELRFAPTAYDDPRGKLFKLQQTDSVASYLSEFESLANRIVGLSLHDLLSCFISGLKSEIRREVLAQQPSSLSQATGLARLQEEKFQDLLRLTKTRPSSSWQAPSTTRTISPFPAKSVSDSPPPKTVMPPLLPTPVPKTRYRQLSASELAERREKGLCFNCDERFSRHHKCKARFLLLIAEEDESETEGSGQSNFGSPDQIMALFDPPDAAQLAQLSFHAMSGTQTAQTIKVLGGVAQHSVHVLVDGGSTLNFIQTQVARTLGLQHSSSPTLRVMVGNGDELTSAQVCKEVQIEIQGHSFVVDLYTLNLSGPDIVLGTPWLKTLGPVLMDYQSLTMKFQYGAKEIVLQGEIGPSYNNISYHQLKKLVQHEPTAQIFSLHILDSDDSSSISTSENLGPIFMDLLHRYAPLFDEPTSLPPSRFTDHQIPLNHNAVPVNVRPYRYPHAQKQEIESQIRKLLENGWIQPSNSPFSSPVLLLKKKDGTWRMIVFRYPLLTSFWMNLDPREFFPSWXLSKRYYGPYLVLAKVGLVAYKLELPSHSRIHNVFHSSLLKLHEGVPPTVIDQIPHDSINNHHVVTPLAVLEFQTRLIEGISTRFALVPVLSVIQYVVDSTILHSLTKFQVYLRRNREGEMDPEGDVWAAPYRWGCMVIAYKTNNFQKYKLAPIEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGASYNANDINLEVNGGRDAVKHNLALLAKQVRLFDSENYLKAFGVGDVWVAVGWSSDIIPVAKRMSNVAVVVPKSGASLWADLWAIPGASRIQTSQIGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPPLLQGHSANVSLELTKGRPRLDTNLIDGAPPPNILERCEFLEPLSNSAVSDYHWLLDSIQKPGNGLIHTVRQYISSVVSFSG* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2550 978 CDD PBP2_PotD_PotF_like_1 700 953 - -
Psa4g2550 978 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 483 562 - -
Psa4g2550 978 Pfam Bacterial extracellular solute-binding protein 694 882 - -
Psa4g2550 978 MobiDBLite consensus disorder prediction 163 191 - -
Psa4g2550 978 CDD retropepsin_like 298 388 - -
Psa4g2550 978 Pfam Retroviral aspartyl protease 301 389 - -
Psa4g2550 978 Pfam Retrotransposon gag protein 35 123 IPR005162 -
Psa4g2550 978 SUPERFAMILY Periplasmic binding protein-like II 698 852 - -
Psa4g2550 978 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 702 718 IPR001188 GO:0015846|GO:0019808|GO:0042597
Psa4g2550 978 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 731 745 IPR001188 GO:0015846|GO:0019808|GO:0042597
Psa4g2550 978 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 749 768 IPR001188 GO:0015846|GO:0019808|GO:0042597
Psa4g2550 978 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 835 854 IPR001188 GO:0015846|GO:0019808|GO:0042597
Psa4g2550 978 Gene3D - 711 859 - -
Psa4g2550 978 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 683 968 - -
Psa4g2550 978 SUPERFAMILY Acid proteases 301 394 IPR021109 -
Psa4g2550 978 MobiDBLite consensus disorder prediction 163 182 - -
Psa4g2550 978 Gene3D Acid Proteases 276 413 IPR021109 -
Psa4g2550 978 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 683 968 - -
Psa4g2550 978 SUPERFAMILY DNA/RNA polymerases 468 554 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2550 Psa-Chr4 204789566 204793621 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2550 - - vra:106770116 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2550 4 204789566 204793621 Psa4g2550 4 204789566 204793621 ECH