Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01615 ATGGATGCTATACGGAAGCAAGCAAGCAAGTTAAGGGAACAAGTTGCAAGGCAACAGCAGGCCATACTTAGACAGTTGGGTCAAATTAGCAATGAACCGCTCATGACTGATGAATCTGAAATTGAATGTCACCAGCACCTTCAGAAGTTATACACTTCCACAAAGACAGCTAAGCATTTTCAGCGGCATATTGTTCGAGCTATAGAAGGGTTCATCTCTGTTAGCTCCAAGCAGATGGAGATAGTGAGGAGGTTGGCTAGGGACTGCTGTAGGTATGGGACTGAGAATCTTGGTAGTGGTTACCCTCTTGCAAGGGCTTCTCTTCAATTTGGTAACTCGTATGATATGATGGAAAATGAGAGGGAAACTTTGCTCGGGATCTTAGGTGATCAGATCTCTGAGCCACTGCGGGCACAAATAACAGGAGCTCCTTTGGAGGATGCACGCCATCTCACTCACCGGTATGATAAACTTCATCAAGAAGTAGAAGCACAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTGCAGAGAGTTCTGTGAGGCTTCAGAATGCAGAAACAAGGTTGAAAGAACTTAAATCTGCCTTGGCAGCACTTGGTAAAGAAGCTACCGCTGCTATGTTGTCCGTTGAAGAACAACAGCAACAGATGACTCTCCAGAGCCTTCGTACAATGGTGGATGCAGAGAGAGCCTATCATCAGCATGTCCTTATTATTCTAGAGAAAGTATATACTGAGATAACTGATGAGAAACAACCAAAAGAGGCTACATCAGTTCCACCGCCAAGAGATGGACATAATCAACCTGCAGATGAGAATACTGCTTCAAATGGCATTGATTATAAACACAACAGTCAAACAGGCACCTACTTTTTTGCAAAGGTCGTACATCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGCCTATCAGTTGATGATTTTGTTGTAGTTCGCCAGGTTGGTCCGAATGGATGGTCTGAAGGAGAATGCCAAGGCAATGCTGGATGGTTTCCCACTGCTTATGTACAGAGACAGGACTTGATACCTGCCAACAAGGTACCAGAATAA 1089 0.4454 MDAIRKQASKLREQVARQQQAILRQLGQISNEPLMTDESEIECHQHLQKLYTSTKTAKHFQRHIVRAIEGFISVSSKQMEIVRRLARDCCRYGTENLGSGYPLARASLQFGNSYDMMENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLHQEVEAQAAEVLRRRSKLRNSSVSAESSVRLQNAETRLKELKSALAALGKEATAAMLSVEEQQQQMTLQSLRTMVDAERAYHQHVLIILEKVYTEITDEKQPKEATSVPPPRDGHNQPADENTASNGIDYKHNSQTGTYFFAKVVHPFDAQAEGELSLSVDDFVVVRQVGPNGWSEGECQGNAGWFPTAYVQRQDLIPANKVPE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01615 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Viun2g01615 362 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Viun2g01615 362 Gene3D SH3 Domains 298 352 - -
Viun2g01615 362 Coils Coil 1 21 - -
Viun2g01615 362 Coils Coil 182 209 - -
Viun2g01615 362 Gene3D Arfaptin homology (AH) domain/BAR domain 29 265 IPR027267 -
Viun2g01615 362 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Viun2g01615 362 SUPERFAMILY SH3-domain 298 354 IPR036028 GO:0005515
Viun2g01615 362 SMART SH3_2 298 353 IPR001452 GO:0005515
Viun2g01615 362 Coils Coil 159 179 - -
Viun2g01615 362 PANTHER SH3 DOMAIN-CONTAINING 18 351 - -
Viun2g01615 362 MobiDBLite consensus disorder prediction 257 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01615 Viun-Chr2 25979644 25984009 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01615 - - gmx:100816554 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01615 2 25979644 25984009 Viun2g01615 2 25979644 25984009 ECH