Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0555 ATGCTTGAGGAGCGGCCAATTTCGTTGCGGCAAAGTCCTTCGAGAAGGAGGTTGTTGAGGCCTGGTGTTGATACTGATGATAGGGGTTGGACCTCACTTCATGTTTATGCAAGGAAAGGTGATATCAAGCTGGTAAAAAAGCTTCTCAACGAAGGAATGGATGTTAATGTGACCGCATGGGGCCCTAAATCTAAAGGTGTGACCCCTCTCCACCTTGCTGCTGAAGGTGGTCACCTCGGAGTGATGGATGAACTGCTTGAGCGTGGTGCCAATATTGATGCCAGAACTAAGGGTGCTTGTGGCTGGACACCGCTCCACATTGCAGCTAAAGAGAGGAATAGGGATGCTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACCGGATATCAATGATAGCAGATTTAATCCTCCTCTTCATTACTGCCCAGGACTTGAATGGGCCTATGAGGAAATGAAGCGACTTCGACAGGAAGAATCATCCTCCGAAGAGACATCTTGCAGCTCTGAAAACTAA 519 0.4778 MLEERPISLRQSPSRRRLLRPGVDTDDRGWTSLHVYARKGDIKLVKKLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQEESSSEETSCSSEN* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0555 172 Gene3D - 62 164 IPR036770 -
Mal6g0555 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Mal6g0555 172 SUPERFAMILY Ankyrin repeat 25 143 IPR036770 -
Mal6g0555 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Mal6g0555 172 Gene3D - 7 61 IPR036770 -
Mal6g0555 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Mal6g0555 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Mal6g0555 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Mal6g0555 172 Pfam Ankyrin repeat 100 125 IPR002110 GO:0005515
Mal6g0555 172 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 6 171 - -
Mal6g0555 172 Pfam Ankyrin repeats (3 copies) 17 95 IPR002110 GO:0005515
Mal6g0555 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Mal6g0555 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Mal6g0555 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Mal6g0555 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Mal6g0555 172 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 6 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0555 Mal-Chr6 7368535 7371088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0555 32 155 Acyl Lipid Metabolism Gene Families AT5G53470 32.258 6.00e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0555 - - aprc:113868977 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0555 6 7368535 7371088 Mal6g0555 6 7368535 7371088 ECH