Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1098 ATGGCTTCTTCTTCCTCCTCCTCCTTTCTCTCACACCCACTTCACCGTTCCCAAGACCTTAAACCAAACCCTAACCTTCCATTCCTACAGCATCGTAGTCTCAGATTCTCCCTCAACTTCTCCTGCGTTTCCGGTCCACGGTACCGGCCTCCATGTTTGCCGGCGTTGCCCACCTCCGGTGTGTCTCCGCCACCACCGGAGCAGCCCTCCAGACTGCCTCCCGACTTGCTTCAGATTGCGTCCGTCTCTGCTATTCTCTTCCTCGGGTTCAGTGTCCGCGCCTGCTCTGCCACTTCAGGACGTTTTCCGGCGGTTGTAGCCGCCGAGTGTCGAACTGTTCAGGAGCAGAGGATTCAAGATAGTGATGGTGTTGGAAAAAGTGAGGATACAGAAAACTTGGAAGATAAGGAGTTGAAAGAAGCTTTCAAAAGATGGAAGTCTAAACCATATGCTTTGACAGTCCCTCTGAGAATTGTCACTCTACGTGGCTCTTTACCTCCTTCATGGGTTAAGGATTTTATGCAATCACAAGGAAGGAGATTAAGGTTACTGTCAAATTTCCGTGGAAGTCTTCAGGACATATTCTCTGAACTATGTCGGCCCTTGAGCAAAGGCAAAATTGAGCCTAAATCTGCCCTAGCAGCTGATATTGTCACTGTTGGTGACTCCTGGCTTGACTTAGCCATTAATAAGGGTATAATTGAGCCCATACAAGGGGTGGAAGACCAAGATTGGTTTAGAGGGTTAAGCTATAAATGGAAGGTATATTTACGCAGGAACAGCAAAGGAGAATTAGATGCTGAAGGTAAAATATGGGCTGCTCCATATCGATGGGGAAGCATGGTGATAGCATACAAGAAAAGCAAATTTGAAAAGCATAAATTGGCTCCTATAGAGGACTGGGCAGATTTATGGCGACCTGAACTTGCAGGGAGGATTTCAATGATTGATTCTCCACGAGAGGTTGTTGGTGCTGTTTTAAAGTACATGGGAGCATCCTACAACACAGACAACATTGAATTGCAAGTTAATGGTGGGAGGAATGCTGTACAGCAGAATCTTATGTTGCTTGCGAAACAGGTACGATGCTTTGACAGCACACACTATATAAAAGCACTTAGTGTGGGAGATGTATGGGTGGCTGTTGGGTGGAGTAGTGATGTCCTTCCTGCAGCCAAACGCATGTCTAATGTTGCAGTAATTGTTCCTAAGTCTGGAGCTAGCTTATGGGCAGATCTTTGGGCAATCCCATCTACTTCAAAACTTGAAAGAAGCCGCCAAATCGGGGGCCGAGTCAGAGGGCCATCTCCAGTAATCCATCAATGGATAGAGTTCTGCTTGCAAGCTGCAAGAGCTTTTCCTTTCACAGAGGAAGTAATCCCCGGTGCATCCCCCTCTGCAATTGAATGTGCCTCAGTTGAAGCCCCTAGAGAGCTCACCAAGGGGAAACCAAAACTGGAAACCAACCTCATTGCTGGAATGCCCCCACCTGAAATTTTGGCTCACTGCGAGTTCTTGGAGCCATTGTCTGATGCCACATTGTCAGATTATCGGGGGCTGATAGCTGGTATTCAGAAACCAAGTCATGGTCTGATCCATGGACTACATCGCTACATCTTGTCATTGAAAGAATTCTTTCAGCAAAGCTACTTGAAGAGGTAA 1662 0.4705 MASSSSSSFLSHPLHRSQDLKPNPNLPFLQHRSLRFSLNFSCVSGPRYRPPCLPALPTSGVSPPPPEQPSRLPPDLLQIASVSAILFLGFSVRACSATSGRFPAVVAAECRTVQEQRIQDSDGVGKSEDTENLEDKELKEAFKRWKSKPYALTVPLRIVTLRGSLPPSWVKDFMQSQGRRLRLLSNFRGSLQDIFSELCRPLSKGKIEPKSALAADIVTVGDSWLDLAINKGIIEPIQGVEDQDWFRGLSYKWKVYLRRNSKGELDAEGKIWAAPYRWGSMVIAYKKSKFEKHKLAPIEDWADLWRPELAGRISMIDSPREVVGAVLKYMGASYNTDNIELQVNGGRNAVQQNLMLLAKQVRCFDSTHYIKALSVGDVWVAVGWSSDVLPAAKRMSNVAVIVPKSGASLWADLWAIPSTSKLERSRQIGGRVRGPSPVIHQWIEFCLQAARAFPFTEEVIPGASPSAIECASVEAPRELTKGKPKLETNLIAGMPPPEILAHCEFLEPLSDATLSDYRGLIAGIQKPSHGLIHGLHRYILSLKEFFQQSYLKR* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1098 553 CDD PBP2_PotD_PotF_like_1 155 522 - -
Vvi2g1098 553 SUPERFAMILY Periplasmic binding protein-like II 156 421 - -
Vvi2g1098 553 Gene3D - 279 433 - -
Vvi2g1098 553 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 76 524 - -
Vvi2g1098 553 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g1098 553 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 299 313 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vvi2g1098 553 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 317 336 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vvi2g1098 553 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 270 286 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vvi2g1098 553 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 403 422 IPR001188 GO:0015846|GO:0019808|GO:0042597
Vvi2g1098 553 Pfam Bacterial extracellular solute-binding protein 215 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1098 Vvi-Chr2 17382961 17393010 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1098 - - vvi:100242504 1081.63