Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2072 ATGCTCGAGGAACGGCCTGTTTTGTTGAGGAACAGCCCTTCCAGAAGGCGCTTGAGGCCTGGGTTTGATACCGATGATAGGGGTTGGACCTCGCTTCATGTTTTCGCTCGGAAAGGCGATCTTAAATTGGTTAAAAAACTTCTCAATGAAGGAATGGATGTCAATGTGTCTGCATGGGGCCCTAAATCAAAAGGGGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCACATTGGAGTGATGGATGTACTACTTGAGCGTGGTGCTGACATTGATGCCAGAACTAAGGGTGCTTGTGGCTGGACCCCGCTCCACATTGCAACCAAAGAAAGGAGGAGGGATGCTGTGAAATTCTTGATAGAGAATGGAGCCTTCTTGCCACCTGATATCAATGATAGCAGATTTAACCCTCCGCTTCATTACTGTCCCGGACTGGAATGGGCCTATGAGGAGATGAAGCGACTTCGACAGGAAGACTTATCTGCTGGAGAGACGTCTTACAGTTCTGAAAGTTAA 516 0.4903 MLEERPVLLRNSPSRRRLRPGFDTDDRGWTSLHVFARKGDLKLVKKLLNEGMDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLERGADIDARTKGACGWTPLHIATKERRRDAVKFLIENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETSYSSES 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat region circular profile. 27 56 - -
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat region circular profile. 99 124 - -
Ssu2g2072 171 SMART ANK_2a 64 93 IPR002110 GO:0005515
Ssu2g2072 171 SMART ANK_2a 27 56 IPR002110 GO:0005515
Ssu2g2072 171 SMART ANK_2a 99 132 IPR002110 GO:0005515
Ssu2g2072 171 PRINTS Ankyrin repeat signature 28 43 IPR002110 GO:0005515
Ssu2g2072 171 PRINTS Ankyrin repeat signature 80 94 IPR002110 GO:0005515
Ssu2g2072 171 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 170 - -
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
Ssu2g2072 171 SUPERFAMILY Ankyrin repeat 24 142 IPR036770 -
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Ssu2g2072 171 Pfam Ankyrin repeats (3 copies) 32 124 IPR002110 GO:0005515
Ssu2g2072 171 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 8 170 - -
Ssu2g2072 171 Gene3D - 17 163 IPR036770 -
Ssu2g2072 171 ProSiteProfiles Ankyrin repeat profile. 99 124 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2072 31 154 Acyl Lipid Metabolism Gene Families AT5G53470 33.065 9.01e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2072 - - gmx:100818162 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2072 2 75574284 75578157 Ssu2g2072 2 75574284 75578157 ECH