Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0475 ATGGGTACTGCACAGGTTGACCTTGGGTCTCTCTCAGTAATGGGCGTGTTGCTGCAAACGCATCACCCTCTTTCTCCACACTCACCGCGCTATCCTTATCTATTCCCTAACCCTACTAACCCTTACCATTCTTTTCTTATAAGCCCCGCCACATCCACCAAATCCCTAGTGCGATTCAATGCAACAATTCGATTCTCAGGTCACCGGAGTCTCCCACACCGTTCGCCGGCGTCACCCACAGCCTTCGCTTCCCACCGACCGCCACCTTCGGAAACGACGCCTCTTAAGGCTTTCGTGCCCTTCGCCGTCTCCGCCGTGCTGTTTCTCTGCTTCGGCATTCGCGTGTGTTCGGTCTCATCGCCGGCAGCAGCTCTTGCCGCCGGTTCATCTTCGGTTATGGGGGAGCAAACTGTTCAAGATGATCATGATGGAAGAAAGCATGACAGCAAAGAGTCGGTAGTAGATAAGGAGTTAGAAGCAGCTTTTAACACCTGGAAATCTAAAACATATGCGTTGACTGTCCCTTTGAAAGTTGTCGCTCTCCGTGGCTCTATACCTCCTTCATGGATCAAGGACTTCATAAATTGTCAAGGGAGGAGAATGAAGTTTAACATTAAGTATTATGCAAGTCTTGAGAATATCTTTTCTGATCTATCAATTTCCTTTACTAAAAGAAATATTGGCCCAGCATCTGCTTTGGCAGCAGATATTGTTGGAATTGGCGATTCATGGCTCAAATTTGCTGTTAACAAAGCTATAATTGAGCCAATAAGAGATGTAGAAGATCAAGAATGGTTTAAAAGCTTAGATGAGAAATGGAAGGTATACCTACGCAGGAACTGTGAGGGAGAAATAGATCCTAAAGGTGATATTTGGGCTGCTCCATATCGATGGGGCTGCATGGTGATAGCATACAAGACAAATAAATTTCAAAAGCATAACTTGGCTGCTGTAGAGGACTGGGCAGATCTGTGGCGGCCTGATCTTGCAGGGAGGATTTCAATGGTTGATTCTCCTAGAGAAGTTGTTGGTGCAGTTTTGAAATATATGGGGGCTTCCTACAATACAAATAACATTGATACAGAAGTTAATGGTGGGAGAGAGGCTGTTAAGCATAACTTGGCTTTGCTAGCAAAACAGATTCGACTCTTTGATAGTTCAAACTATTTAAAAGCTTTTGGAGTTGGAGACGTATGGGTAGCTGTTGGATGGAGTAGCGATGTTATTCCTGTTGCCAAACGCATGTCAAATGTTGCAGTTGTTGTTCCAAAGTCTGGAGCGAGTTTATGGGCAGATCTTTGGGCAATTCCTGCGGCCTCTAAGATTCAAACAAATCGAATTGGTGGACGTGTCAGGGGACCGTCACCATTAATCCATCAGTGGATAGAGTTTTGTCTGCAATCTGCACGAGCACTCCCTTTTAAGCAGGAGGTGATCCCAGGTTCCTCTCCCTTTCATCTTCAAGGTCATTCAGCCAATGTGCCCATGGAGTTAACGAAAGGTAGGCCCAGGCTAGATACCAATCTTGTTGATGGAGCACCTCCGCCTGACATTGCAGAAAGGTGCGAGTTTCTTGAGCCATTATCTAATTCAACATTGTCAGATTACCACTGGTTGCTTACCTCTATCCAGGAACCTGGCCATGGGTTGATACAAAAAATGCACCATTATTTCTCATCAGTGGTTAAATTTTCTGGCTGGTTTAATTCAAAGCTCACTTGA 1722 0.453 MGTAQVDLGSLSVMGVLLQTHHPLSPHSPRYPYLFPNPTNPYHSFLISPATSTKSLVRFNATIRFSGHRSLPHRSPASPTAFASHRPPPSETTPLKAFVPFAVSAVLFLCFGIRVCSVSSPAAALAAGSSSVMGEQTVQDDHDGRKHDSKESVVDKELEAAFNTWKSKTYALTVPLKVVALRGSIPPSWIKDFINCQGRRMKFNIKYYASLENIFSDLSISFTKRNIGPASALAADIVGIGDSWLKFAVNKAIIEPIRDVEDQEWFKSLDEKWKVYLRRNCEGEIDPKGDIWAAPYRWGCMVIAYKTNKFQKHNLAAVEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGASYNTNNIDTEVNGGREAVKHNLALLAKQIRLFDSSNYLKAFGVGDVWVAVGWSSDVIPVAKRMSNVAVVVPKSGASLWADLWAIPAASKIQTNRIGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGSSPFHLQGHSANVPMELTKGRPRLDTNLVDGAPPPDIAERCEFLEPLSNSTLSDYHWLLTSIQEPGHGLIQKMHHYFSSVVKFSGWFNSKLT* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0475 573 CDD PBP2_PotD_PotF_like_1 175 541 - -
Apr3g0475 573 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 290 306 IPR001188 GO:0015846|GO:0019808|GO:0042597
Apr3g0475 573 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 319 333 IPR001188 GO:0015846|GO:0019808|GO:0042597
Apr3g0475 573 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 337 356 IPR001188 GO:0015846|GO:0019808|GO:0042597
Apr3g0475 573 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 423 442 IPR001188 GO:0015846|GO:0019808|GO:0042597
Apr3g0475 573 SUPERFAMILY Periplasmic binding protein-like II 176 441 - -
Apr3g0475 573 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 96 556 - -
Apr3g0475 573 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 96 556 - -
Apr3g0475 573 Gene3D - 184 444 - -
Apr3g0475 573 Pfam Bacterial extracellular solute-binding protein 235 469 - -
Apr3g0475 573 Gene3D - 299 430 - -
Apr3g0475 573 MobiDBLite consensus disorder prediction 70 89 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0475 - - aprc:113857970 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0475 3 9861510 9869654 Apr3g0475 3 9861510 9869654 ECH