Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1099 ATGGAGGCCATTCGCAAGCAGGCAAGCAAGCTGAGGGAGCAAGTAGCCAGGCAGCAACAGGCAGTTCTGAAACAATTGGGACATTTTGGTATTGAAACTGTTGTGGTTGATGAAGCTGAACAGAGGCAATTACAGAACTTGTACAATTCTACAAGGACGGCTAAGCATTTTCAGAAGGACATTGTTCGTGGTATTGAAGGTTTTGTTTCTACAAGCTCAAAGCAAATGGAGATAGTAAGAAGGATGGCTGAAGATTGTTGCAAATATGGAACTGAGAATCAAAGCACTGGTTCTCCTCTTGCAAGAGCTGCTCTTTACTTTGGCAACTCACATAGTTCAATGGAAAAAGAGAGGGAGACTTTGCTTGGGGTCTTCTGTGATCAGGTTTCTGAGCCACTACGAGTATTAATAACAGGAGCTCCTTTGGAGGATGCTCGCCACTTGACTCACCGCTATGAAAGACTTCGCCAAGAGGTGGAGTCCCAGGCAGCTGATGTGTTAAGGCGCCAAGCAAAGTTCAGGGACCCTGCTACTTCTGCAGAGAGTTCCATAAAGCTTCAAAGTGCAGAAGCAAAATTGAGTGAGCTTAAATCTGCTATGATGGCACTTGGCAGAGAAGCAACTGCTGCTATGCTGTCAGTTGAGGCTCAGCAGCAGCGAATAACATTCCAACGGCTTCTTACTATGGTGGAAGCTGAGAGATCTTATCATCAAACTGTACTTGCTACTTTAGAGAAACTATACGATGAGATGATTATGGAGAAGAAACAAAACGAGTCTTCATCTCAGCCAATAACTATGGAGAAAGATGTTTGCGTTCCTACCACATCCAAGGATGCAAATTCAAATGGCTTTGACAATCATGGACATGCAAATCAAAATGGTTCATACTTTATTGCAAAAGTTATACACCCATTTGATGCTCAAGCAGATGGAGAGCTCGGTCTTTCTGTTGATGATTATGTTGTCGTTCGCCAGGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGATAAATGAAGAAGCAAGTCTCGCCATGATTCCAAACTGA 1116 0.4498 MEAIRKQASKLREQVARQQQAVLKQLGHFGIETVVVDEAEQRQLQNLYNSTRTAKHFQKDIVRGIEGFVSTSSKQMEIVRRMAEDCCKYGTENQSTGSPLARAALYFGNSHSSMEKERETLLGVFCDQVSEPLRVLITGAPLEDARHLTHRYERLRQEVESQAADVLRRQAKFRDPATSAESSIKLQSAEAKLSELKSAMMALGREATAAMLSVEAQQQRITFQRLLTMVEAERSYHQTVLATLEKLYDEMIMEKKQNESSSQPITMEKDVCVPTTSKDANSNGFDNHGHANQNGSYFIAKVIHPFDAQADGELGLSVDDYVVVRQVAPNGWSEGECKGTAGWFPSAYVERRDKAPASVINEEASLAMIPN* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1099 371 Coils Coil 145 165 - -
Vvi2g1099 371 Coils Coil 1 21 - -
Vvi2g1099 371 Coils Coil 186 206 - -
Vvi2g1099 371 PANTHER SH3 DOMAIN-CONTAINING 37 352 - -
Vvi2g1099 371 SUPERFAMILY BAR/IMD domain-like 42 251 IPR027267 -
Vvi2g1099 371 SUPERFAMILY SH3-domain 297 359 IPR036028 GO:0005515
Vvi2g1099 371 Gene3D SH3 Domains 282 365 - -
Vvi2g1099 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Vvi2g1099 371 SMART SH3_2 298 353 IPR001452 GO:0005515
Vvi2g1099 371 Gene3D Arfaptin homology (AH) domain/BAR domain 39 274 IPR027267 -
Vvi2g1099 371 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1099 Vvi-Chr2 17393861 17407002 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1099 - - vvi:100249391 726.857