Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0859 ATGCCTCAAGAGCAGCTGGGGTCCATTCGTAGGAGCTTGTCAAGAAGGCGCTCCTTAAGGTCTGGGGCAGGTACGGATGATAGGGGGTGGACCTCACTTCATGTTTACGCTCGCAAAGGGGATCTTAAATTGATGAAAAGCTATTCTGCAAGGTTTCTTCACTGTGTGTTTGTCTTCAAAGTGGGTTTCAATTCTGTCATACACTGTTTGCTTACTAGGCTTCTACCAACCGCCCTGTTCAACAATCAACAGGTTAAAAAGCTTATTGACGACGGAATGGATGTAAATATTGTTGCATGGGGTCCAAAATCAAAAGGTGTGACCCCGCTTCATCTTGCTGCTGAAGGTGGGCACCTTGAAGTCATGGATGAATTACTTGAGCGTGGTGCTAACATTGATGCCAGGACTAAGGGTGCTTGTGGCTGGACACCTCTCCACATTGCAGCTAAAGAAAGGAGGAGGGCTGCGGTGAAATTCCTAATAGAGAATGGAGCATTTTTACCTCCTGATATCAATGATTGCAGATTTAATCCCCCAGTTCATTACTGCTCAGGACTTGAATGGGCCTATGAGGAAATGAAGCTTCATTATGAAGAGTCGACATCATCTGGGGAGACCTCTAGCAGCCCAGAAAGCTGA 639 0.4632 MPQEQLGSIRRSLSRRRSLRSGAGTDDRGWTSLHVYARKGDLKLMKSYSARFLHCVFVFKVGFNSVIHCLLTRLLPTALFNNQQVKKLIDDGMDVNIVAWGPKSKGVTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTPLHIAAKERRRAAVKFLIENGAFLPPDINDCRFNPPVHYCSGLEWAYEEMKLHYEESTSSGETSSSPES 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0859 212 Pfam Ankyrin repeats (3 copies) 83 165 IPR002110 GO:0005515
Lele52g0859 212 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Lele52g0859 212 ProSiteProfiles Ankyrin repeat region circular profile. 140 165 - -
Lele52g0859 212 Gene3D - 20 205 IPR036770 -
Lele52g0859 212 SUPERFAMILY Ankyrin repeat 25 165 IPR036770 -
Lele52g0859 212 ProSiteProfiles Ankyrin repeat profile. 140 165 IPR002110 GO:0005515
Lele52g0859 212 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 26 184 - -
Lele52g0859 212 PRINTS Ankyrin repeat signature 106 121 IPR002110 GO:0005515
Lele52g0859 212 PRINTS Ankyrin repeat signature 156 170 IPR002110 GO:0005515
Lele52g0859 212 SMART ANK_2a 28 55 IPR002110 GO:0005515
Lele52g0859 212 SMART ANK_2a 105 134 IPR002110 GO:0005515
Lele52g0859 212 SMART ANK_2a 140 173 IPR002110 GO:0005515
Lele52g0859 212 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Lele52g0859 212 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0859 Lele-ChrLele52 5563360 5564953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0859 23 183 Miscellaneous Gene Families AT5G02620 26.994 3.32e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0859 52 5563360 5564953 Lele52g0859 52 5563360 5564953 ECH
Lele49g0840 49 5207028 5208527 Lele52g0859 52 5563360 5564953 hybridization
Lele50g0875 50 5518084 5519653 Lele52g0859 52 5563360 5564953 hybridization