Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1282 ATGATTATTATTATGATGAACTCCATCTTCGCCTCGCATAACCTTCGCGTCTTCGGTCCCGGCTTGAATCCCTTCGCACCTTATTGCATCGCCAATCACTCAAGAAAGATGCTGGAGGAACAGCCTGTTGTTTTGTTCAGGAAGAGCCCTTCCAGGAGGCGCTTGAGATCTGCTTTTGCTACCGATGATAGGGGTTGGACCTCGCTTCATGTTTTCGCTCGAAAAGGCGATCTCAAATTGGTTAAAAAACTTCTCAATGAAGGAATGGATGTCAATGTGTCTGCATGGGGCCCCAAATCAAAAGGGGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCACATTGGAGTGATGGATGTACTACTTGAGTGTGGTGCTGACATTGATGCCAGAACTAAGGGTGCTTGTGGCTGGACGCCGCTCCACATTGCAGCCAAGGAAAGGAGGAGGGATGCTGTGAAATTCTTGATAGAGAATGGAGCCTTCATGCCACCTGATATCAGTGATAGCAGATTTAACCCACCGCTTCATTACTGCCCCGGACTGGAATGGGCCTATGAGGAGATGAAGCGACTTCGTCAGGAAGACTTGTCTGCTGGAGAGACATGTTACAGCTCTGAAAGTTAA 627 0.4896 MIIIMMNSIFASHNLRVFGPGLNPFAPYCIANHSRKMLEEQPVVLFRKSPSRRRLRSAFATDDRGWTSLHVFARKGDLKLVKKLLNEGMDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLECGADIDARTKGACGWTPLHIAAKERRRDAVKFLIENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETCYSSES* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1282 208 Pfam Ankyrin repeats (3 copies) 62 131 IPR002110 GO:0005515
Gso1g1282 208 PRINTS Ankyrin repeat signature 65 80 IPR002110 GO:0005515
Gso1g1282 208 PRINTS Ankyrin repeat signature 117 131 IPR002110 GO:0005515
Gso1g1282 208 ProSiteProfiles Ankyrin repeat region circular profile. 136 161 - -
Gso1g1282 208 Pfam Ankyrin repeat 136 161 IPR002110 GO:0005515
Gso1g1282 208 Gene3D - 47 199 IPR036770 -
Gso1g1282 208 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 44 207 - -
Gso1g1282 208 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 44 207 - -
Gso1g1282 208 ProSiteProfiles Ankyrin repeat region circular profile. 101 133 - -
Gso1g1282 208 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Gso1g1282 208 ProSiteProfiles Ankyrin repeat profile. 136 161 IPR002110 GO:0005515
Gso1g1282 208 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Gso1g1282 208 ProSiteProfiles Ankyrin repeat region circular profile. 64 93 - -
Gso1g1282 208 SMART ANK_2a 64 93 IPR002110 GO:0005515
Gso1g1282 208 SMART ANK_2a 136 169 IPR002110 GO:0005515
Gso1g1282 208 SMART ANK_2a 101 130 IPR002110 GO:0005515
Gso1g1282 208 SUPERFAMILY Ankyrin repeat 61 179 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1282 Gso-Chr1 49265300 49268151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1282 68 191 Acyl Lipid Metabolism Gene Families AT5G53470 33.065 9.97e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1282 - - gmx:100814428 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1282 1 49265300 49268151 Gso1g1282 1 49265300 49268151 ECH
Gso1g1282 1 49265300 49268151 Gso9g1781 9 42269737 42272084 GST