Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1101 ATGGAAGGTTTCAACCTCAAGTTTGTCTTCTGCCTCTTAGCAATCATCTTCCTCATTTATTTCGCTAAGCATTCTCAAGCGGAAGCCAAAGTAGATGGCTTCACCACTGATTTCATCTCCCGTGATTCGCCTCGCTCCCCCTTTTATAATCCATCTGAAACCAAGTACCAACGCTTGCAGAAAGCCTTTCGCCGCTCCATTCTGCGTGGCAACCATTTTAGGGCTATAAGGGCGTCTCCAAATGATATTCAATCCAATGTAATCTCCGGGGGTGGATCCTATCTCATGAATATATCACTCGGAACCCCACCAGTTTCAATGCTTGGCATTGCTGATACTGGAAGTGATCTCATATGGAGGCAGTGTCTGCCTTGTGATGATTGTTACAAGCAAGTAGAACCTCTCTTCGATCCCAAAAAGTCGAAAACCTACAAAACTTTAGGCTGTAACAATGACTTCTGTCAAGATTTGGGACAACAAGGCTCTTGCGGTGATGACAACACCTGCACCTCTAGTTACTCCTATGGAGATCAATCATACACCAGGAGAGATCTCTCCTCTGAAACCTTCACAATTGGGTCTACTGAAGGTGATCCAGCTTCGTTTCCAGGCCTTGCGTTTGGGTGCGGGCACAGCAATGGAGGAACCTTCAATGAAAAGGATAGTGGCTTAATAGGCCTTGGGGGTGGCCCTCTTTCACTAGTTATGCAATTGAGTTCCAAAGTGGGCGGACAGTTCTCCTACTGCCTGGTGCCACTATCAAGCGATTCAACTGCTTCAAGCAAGATAAATTTCGGTAAAAGCGCAGTTGTTTCGGGTTCTGGGACGGTCTCGACTCCTTTGATTAAAGGAACCCCTGATACCTTCTACTACCTTACATTGGAAGGCATGAGTTTGGGAAGCGAAAAGGTGGCATTCAAAGGTTTTTCAAAGAACAAGTCTTCGCCTGCAGCTGCGGAGGAGAGCAACATTATCATTGATTCAGGGACGACCCTAACCCTTCTCCCCCGAGACTTCTACACTGATATGGAATCAGCCCTAACAAAGGTCATCGGCGGCCAAACTACTACTGACCCGAGAGGGACTTTCAGCCTTTGTTACAGTGGCGTAAAAAAATTAGAAATCCCCACCATTACTGCTCATTTCATCGGGGCAGACGTGCAGTTGCCGCCATTGAACACATTTGTCCAAGCGCAGGAAGATTTGGTTTGCTTCTCCATGATTCCGTCTTCCAATTTGGCCATCTTTGGCAACCTGTCTCAAATGAACTTCTTGGTAGGGTATGATCTCAAGAACAATAAGGTTTCCTTCAAGCCTACTGATTGCACTAAGCAGTAG 1338 0.4641 MEGFNLKFVFCLLAIIFLIYFAKHSQAEAKVDGFTTDFISRDSPRSPFYNPSETKYQRLQKAFRRSILRGNHFRAIRASPNDIQSNVISGGGSYLMNISLGTPPVSMLGIADTGSDLIWRQCLPCDDCYKQVEPLFDPKKSKTYKTLGCNNDFCQDLGQQGSCGDDNTCTSSYSYGDQSYTRRDLSSETFTIGSTEGDPASFPGLAFGCGHSNGGTFNEKDSGLIGLGGGPLSLVMQLSSKVGGQFSYCLVPLSSDSTASSKINFGKSAVVSGSGTVSTPLIKGTPDTFYYLTLEGMSLGSEKVAFKGFSKNKSSPAAAEESNIIIDSGTTLTLLPRDFYTDMESALTKVIGGQTTTDPRGTFSLCYSGVKKLEIPTITAHFIGADVQLPPLNTFVQAQEDLVCFSMIPSSNLAIFGNLSQMNFLVGYDLKNNKVSFKPTDCTKQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1101 445 Gene3D Acid Proteases 76 264 IPR021109 -
Vvi2g1101 445 PANTHER OS07G0603500 PROTEIN-RELATED 36 443 - -
Vvi2g1101 445 FunFam Probable aspartic protease At2g35615 73 266 - -
Vvi2g1101 445 Pfam Xylanase inhibitor N-terminal 94 266 IPR032861 -
Vvi2g1101 445 Pfam Xylanase inhibitor C-terminal 290 438 IPR032799 -
Vvi2g1101 445 Gene3D Acid Proteases 265 445 IPR021109 -
Vvi2g1101 445 CDD pepsin_A_like_plant 94 442 IPR034161 -
Vvi2g1101 445 FunFam Aspartic proteinase CDR1 268 445 - -
Vvi2g1101 445 ProSiteProfiles Peptidase family A1 domain profile. 94 438 IPR033121 -
Vvi2g1101 445 SUPERFAMILY Acid proteases 88 442 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1101 Vvi-Chr2 17430558 17431895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1101 92 444 Miscellaneous Gene Families AT1G77480 25.197 5.88e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1101 - - vvi:100252746 879.782