Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01607 ATGCTTGAGGAACGGCCAATTTCATTGAGACAAAGTCCTTCGAGAAGGAGATTGTTGAGGCCTGGGGTTGGTACTGATGATAGGGGTTGGACCTCACTTCATGTTTATGCACGGAAAGGTGATATCAAATTGGTAAAAAAGCTTCTCAACGAAGGAATGGATGTTAATGTGAGTGCATGGGGCCCTAAATCTAAAGGGGTGACCCCTCTCCACCTTGCCGCCGAAGGTGGTCACCTTGGAGTGATGGATGAACTGCTCGAGCGTGGTGCTAATATTGATGCCAGAACCAAGGGTGCTTGTGGCTGGACACCACTCCACATTGCAGCTAAAGAGAGAAATAGGGATGCTGTGAAATTCTTGGTTGAGAATGGAGCATTCTTGCCACCAGATATGAATGATAGCAGATTTAATCCGCCTCTTCATTACTGCCCAGGACTAGAATGGGCCTATGAGGAAATGAAACGACTTCGACAGGAAGATTTGTCTCCGGGGGAGACATCTTGCAGCTCTGAAAATTAG 519 0.4721 MLEERPISLRQSPSRRRLLRPGVGTDDRGWTSLHVYARKGDIKLVKKLLNEGMDVNVSAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDMNDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSPGETSCSSEN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01607 172 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED 24 125 - -
Trre9g01607 172 Pfam Ankyrin repeat 29 57 IPR002110 GO:0005515
Trre9g01607 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Trre9g01607 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Trre9g01607 172 Gene3D - 15 163 IPR036770 -
Trre9g01607 172 SUPERFAMILY Ankyrin repeat 26 143 IPR036770 -
Trre9g01607 172 Pfam Ankyrin repeats (many copies) 68 121 IPR002110 GO:0005515
Trre9g01607 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Trre9g01607 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Trre9g01607 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Trre9g01607 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Trre9g01607 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Trre9g01607 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Trre9g01607 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01607 Trre-Chr9 14051586 14053703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01607 32 155 Acyl Lipid Metabolism Gene Families AT5G53470 31.452 1.00e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01607 - - aprc:113868977 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01607 9 14051586 14053703 Trre9g01607 9 14051586 14053703 ECH