Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01117 ATGCTCGAGGAACGACCCGTTTTGTTCAGGAAGAGCCCTTCCCGGAGGCGCTTGAGACCCAGCTTTGACACCGATGATAGGGGTTGGACCTCTCTTCATGTTTTCGCTAGGAAAGGCGATCTCAAATTGGTTAAAAAACTTCTCAATGAAGGAATGGATGTCAATGTATCTGCATGGGGCCCTAAATCGAAAGGGGTGACCCCTCTTCACCTTGCTGCGGAAGGTGGTCACATTGGAGTGATGGACGTACTACTTGAGCGTGGTGCTGACATTGATGCTAGAACTAAGGGTGCTTGTGGCTGGACACCACTTCACATTGCTGCGAAAGAAAGAAGGAGGGATGCTGTGAAGTTCTTGATAGAGAATGGAGCCTTTTTGCCACCTGATATCAATGATAGCAGATTTAACCCTCCTCTTCATTACTGTCCCGGACTCGAATGGGCCTATGAGGAGATGAAGCGACACCGACAGCTAGATATATCTGCTGGAGAGTACAGCTCTGAAAGTTAA 510 0.4843 MLEERPVLFRKSPSRRRLRPSFDTDDRGWTSLHVFARKGDLKLVKKLLNEGMDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLERGADIDARTKGACGWTPLHIAAKERRRDAVKFLIENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRHRQLDISAGEYSSES 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01117 169 ProSiteProfiles Ankyrin repeat profile. 99 124 IPR002110 GO:0005515
Spst2g01117 169 Gene3D - 19 160 IPR036770 -
Spst2g01117 169 ProSiteProfiles Ankyrin repeat region circular profile. 99 124 - -
Spst2g01117 169 SMART ANK_2a 64 93 IPR002110 GO:0005515
Spst2g01117 169 SMART ANK_2a 27 56 IPR002110 GO:0005515
Spst2g01117 169 SMART ANK_2a 99 132 IPR002110 GO:0005515
Spst2g01117 169 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Spst2g01117 169 ProSiteProfiles Ankyrin repeat region circular profile. 27 56 - -
Spst2g01117 169 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 24 141 - -
Spst2g01117 169 SUPERFAMILY Ankyrin repeat 24 142 IPR036770 -
Spst2g01117 169 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Spst2g01117 169 Pfam Ankyrin repeats (3 copies) 22 94 IPR002110 GO:0005515
Spst2g01117 169 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
Spst2g01117 169 PRINTS Ankyrin repeat signature 80 94 IPR002110 GO:0005515
Spst2g01117 169 PRINTS Ankyrin repeat signature 28 43 IPR002110 GO:0005515
Spst2g01117 169 Pfam Ankyrin repeat 99 124 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01117 31 154 Acyl Lipid Metabolism Gene Families AT5G53470 33.065 1.16e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01117 - - gmx:100818162 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01117 2 9812749 9814584 Spst2g01117 2 9812749 9814584 ECH