Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01547 aTGCTGGAGGAACAGCCTGTTGTTTTGTTCAGGAAGAGCCCTTCCAGGAGGCGCTTGAGATCTGCTTTTGCTACCGATGATAGGGGTTGGACCTCGCTTCATGTTTTCGCTCGAAAAGGCGATCTCAAATTGGTTAAAAAACTTCTCAATGAAGGAATGGATGTCAATGTGTCTGCATGGGGCCCCAAATCAAAAGGGGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCACATTGGAGTGATGGATGTACTACTTGAGTGTGGTGCTGACATTGATGCCAGAACTAAGGGTGCTTGTGGCTGGACGCCGCTCCACATTGCAGCCAAGGAAAGGAGGAGGGATGCTGTGAAATTCTTGATAGAGAATGGAGCCTTCATGCCACCTGATATCAGTGATAGCAGATTTAACCCACCGCTTCATTACTGCCCCGGACTGGAATGGGCCTATGAGGAGATGAAGCGACTTCGTCAGGAAGACTTGTCTGCTGGAGAGACATGTTACAGCTCTGAAAGTTAA 519 0.4952 MLEEQPVVLFRKSPSRRRLRSAFATDDRGWTSLHVFARKGDLKLVKKLLNEGMDVNVSAWGPKSKGVTPLHLAAEGGHIGVMDVLLECGADIDARTKGACGWTPLHIAAKERRRDAVKFLIENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETCYSSES 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01547 172 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 171 - -
Gma01g01547 172 Gene3D - 16 163 IPR036770 -
Gma01g01547 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Gma01g01547 172 Pfam Ankyrin repeat 100 125 IPR002110 GO:0005515
Gma01g01547 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Gma01g01547 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Gma01g01547 172 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 8 171 - -
Gma01g01547 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Gma01g01547 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Gma01g01547 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Gma01g01547 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Gma01g01547 172 PRINTS Ankyrin repeat signature 29 44 IPR002110 GO:0005515
Gma01g01547 172 PRINTS Ankyrin repeat signature 81 95 IPR002110 GO:0005515
Gma01g01547 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Gma01g01547 172 Pfam Ankyrin repeats (3 copies) 26 95 IPR002110 GO:0005515
Gma01g01547 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Gma01g01547 172 SUPERFAMILY Ankyrin repeat 25 143 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01547 Gma-Chr1 50983051 50985916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01547 32 155 Acyl Lipid Metabolism Gene Families AT5G53470 33.065 6.07e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01547 - - gmx:100814428 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01547 01 50983051 50985916 Gma01g01547 01 50983051 50985916 ECH
Gma01g01547 01 50983051 50985916 Gma09g02001 09 45634565 45636958 GST