Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0837 ATGGATGCTATAAGAAAGCAAGCTAGCAAATTAAGGGAGCAAGTTGCCAAGCAGCAGCAGGCTATACTTAGACAGTTAGGCCAAATTAGCAATGAACCGCTAATAACGGATGAATCAGAAGTTCAATGTCACCAACAACTGCGAAAATTATACAATTCTACAAAAGCAGCCAAGAATTTTCAGCGGCATATTGTCCGTGGTATTGAAGGTTTAACCTCTGTTAGTTTAAAGCAGATGGATATAGTGAGGAAGTTAGCTAAAGACTGTTGTAAGTATGGGACTGAGAATGAAAACAGTAAATATCCTCTTGCAAAGGCTTCTCTTCACATGGGTAACTCATATGATTTAATGGAAAATGAAAGGGAGACTTTGCTTGCAATCTACGGTCATCAGGTCTCTGAGCAATTACGGGCACAAATTACAGGTGCTCCTTTGGAGGATGCACGCCACCTCACTTATCGCTATGACAAACTTTTTCAAGAGGTAGAAGCTCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGGGAACTCCATGAAGGTTCAAAATGCTGAGACAAGGTTGAAAGAACTTAAATCAGCCTTGGCAGCGCTTGGTAGAGAAGCAACTGCTGCCATGGTGTCAGTTGAAGATGAACAACAACAGATAACTCTCAAGAGCCTTCGTACAATGGTGAATGCCGAGAGAGCTTATCATGAGCATGCCCTTGTTATTTTAGAGAAGCTATATTCTGAGATGATTCTGGAGAAGCAATCAAAAGAGTCTCCTTCCATTCCAGTGCCAAGAGATGGATATAATCAACTTGTGTCTGAGAATGCTAATCTAAATGGTTTTGATCATCGAAGCAATGATTCAACGAGCACCTATTATTTTGTGAAGGTGGTACACCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGTTTATCAGTTGACGATTATGTCTTAGTTCGGCAGGTATCTCCACATGGATGGTCTGAAGGAATATGCAAAGGCAATGCTGGATGGTTTCCGTCTGCATATGTAGAGAGACAGGAGAAAATACCAGCGAGCATGATAATGGAAAGAACATCAACATCTTGA 1104 0.4167 MDAIRKQASKLREQVAKQQQAILRQLGQISNEPLITDESEVQCHQQLRKLYNSTKAAKNFQRHIVRGIEGLTSVSLKQMDIVRKLAKDCCKYGTENENSKYPLAKASLHMGNSYDLMENERETLLAIYGHQVSEQLRAQITGAPLEDARHLTYRYDKLFQEVEAQAAEVLRRRSKLRDSSVSAGNSMKVQNAETRLKELKSALAALGREATAAMVSVEDEQQQITLKSLRTMVNAERAYHEHALVILEKLYSEMILEKQSKESPSIPVPRDGYNQLVSENANLNGFDHRSNDSTSTYYFVKVVHPFDAQAEGELSLSVDDYVLVRQVSPHGWSEGICKGNAGWFPSAYVERQEKIPASMIMERTSTS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0837 367 Coils Coil 189 209 - -
Lele49g0837 367 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Lele49g0837 367 Coils Coil 159 179 - -
Lele49g0837 367 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Lele49g0837 367 SUPERFAMILY SH3-domain 297 358 IPR036028 GO:0005515
Lele49g0837 367 Coils Coil 1 21 - -
Lele49g0837 367 PANTHER SH3 DOMAIN-CONTAINING 18 352 - -
Lele49g0837 367 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Lele49g0837 367 SMART SH3_2 298 353 IPR001452 GO:0005515
Lele49g0837 367 Gene3D SH3 Domains 297 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0837 Lele-ChrLele49 5182997 5187218 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0837 49 5182997 5187218 Lele49g0837 49 5182997 5187218 ECH
Lele49g0837 49 5182997 5187218 Lele51g0855 51 5244195 5249479 hybridization
Lele49g0837 49 5182997 5187218 Lele52g0856 52 5536824 5541004 hybridization