Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01193 ATGACTGATGAATCTGAACTTGAATGTCACCAGCAACTTCGAAAGTTATACACTTCTACAAAGACGGCTAAGCATTTTCAGCGGCATATTGTTCGTGGTATTGAAGGATTAATCTCTGTTAGTTCCAAGCAATTGGAGATAGTAAGGAAGTTGGCTAAGGACTGCTGTAAGTATGGGACTGAGAATCAAGGTAGTGGTTACCCCCTTGCAAGAGCTTCTCTTCAATTGGGTAACTCATATGATATATTGGAAAATGAGAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGATCTCTGAGCCACTGAGGGCACAAATAACAGGAGCTCCTTTAGAGGATGCACGCCACCTCACTCACCGCTACGACAAACTTCGTCAGGAGGTAGAAGCCCAGGCTGCTGAAGTTTTGAGGCGTCGATCCAAGTTGAGGGATTCTTCTGTTTCTGCAGAGAGTTCCATGAGGCTTCAAAATGCTGAAACAAGGTTGAAAGAGCTTAAATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACTGCTGCAATGGTGTCAGTTGAAGAACAACAGCAACAGATAACTCTCCAGAGCCTTTGTACAATGGTCGATGCTGAGAGAGCCTATCATCAGCATGCACTTGTTATTCTAGAGAAACTATATGCTGAGATGACTGATGAGAGGCAACCAAAAGAGTCTACATCATTTCCACTACCAAAAAATGGACATAATCAACCTGCAGACGGGAATGCTAATTCAAATGGCTTTGATTATAAACATAACGTTCAAACGGGAACATACTTTTTTGCAAAGGTCATACATCCATTTGATGCTCAAGCTGAGGGGGAGTTAAGCCTATCACTTGATGATTATGTCGTAGTTCGTCAGGTTGCTGCAAATGGATGGTCTGAAGGAGAATACAATGGCAATGCTGGATGGTTTCCCTCTGCTTATGTACAGAGGCAGGATGTAATACCAACCAGCAATAGAATGGAATAA 987 0.4316 MTDESELECHQQLRKLYTSTKTAKHFQRHIVRGIEGLISVSSKQLEIVRKLAKDCCKYGTENQGSGYPLARASLQLGNSYDILENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLRQEVEAQAAEVLRRRSKLRDSSVSAESSMRLQNAETRLKELKSALVALGREATAAMVSVEEQQQQITLQSLCTMVDAERAYHQHALVILEKLYAEMTDERQPKESTSFPLPKNGHNQPADGNANSNGFDYKHNVQTGTYFFAKVIHPFDAQAEGELSLSLDDYVVVRQVAANGWSEGEYNGNAGWFPSAYVQRQDVIPTSNRME. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01193 328 ProSiteProfiles Src homology 3 (SH3) domain profile. 261 320 IPR001452 GO:0005515
Seca10g01193 328 Pfam Variant SH3 domain 268 316 IPR001452 GO:0005515
Seca10g01193 328 SUPERFAMILY BAR/IMD domain-like 8 220 IPR027267 -
Seca10g01193 328 SMART SH3_2 264 319 IPR001452 GO:0005515
Seca10g01193 328 MobiDBLite consensus disorder prediction 227 251 - -
Seca10g01193 328 Coils Coil 148 175 - -
Seca10g01193 328 Gene3D SH3 Domains 247 327 - -
Seca10g01193 328 MobiDBLite consensus disorder prediction 223 251 - -
Seca10g01193 328 SUPERFAMILY SH3-domain 264 321 IPR036028 GO:0005515
Seca10g01193 328 Coils Coil 114 145 - -
Seca10g01193 328 PANTHER SH3 DOMAIN-CONTAINING 3 317 - -
Seca10g01193 328 Gene3D Arfaptin homology (AH) domain/BAR domain 8 231 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01193 Seca-Chr10 11695164 11699926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01193 - - gmx:100816554 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01193 10 11695164 11699926 Seca10g01193 10 11695164 11699926 ECH