Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0849 . . Adu02g02216 Aed2g0897 Aev02g2014 Ahy12g2324 Ahy2g2007 Aip02g02611 . Amo12g2750 . Apr10g0900 Arst2g02867 . . . Car06g02807 Cca01g02090 . Dod07g1744 . . . Gma01g01426 . Gso3g0220 Lal14g0868 . . . . . Lapu10g01471 . . . . . Lja3g1395 Mal7g0792 Mepo2g00750 Mesa13g04649 . Mtr4g0717 . Phco1g00978 . . Pste6g02463 Pumo7g01046 Rops4g01244 Seca4g11071 Spst4g01644 Ssu4g2582 . Tpr4g0973 Trre7g00727 Tsu06g00679 . Vifa2g05101 . Viun10g01592 Vivi5g01059 .
Pvu10g0850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0851 . . Adu02g02218 . Aev02g2016 Ahy12g2325 Ahy2g2009 Aip02g02613 . . . Apr10g0902 . . . . Car06g02811 . . Dod07g1745 . . Gma07g00747 Gma01g01429 Gso1g1189 . . . . . Lan1g0749 . . . . . . . Lja3g1396 Mal7g0790 . Mesa13g04651 . Mtr4g0715 . . . Psa7g5295 . . . . . Ssu4g2583 . Tpr4g0972 . Tsu06g00678 . . . . . .
Pvu10g0852 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0854 . . . Aed2g0896 Aev02g2020 . . . . . . Apr10g0904 . . . . Car06g02812 Cca01g02091 . Dod07g1748 . . . . . Gso3g0218 Lal14g0870 . . . . . Lapu10g01472 . . . . . Lja3g1398 Mal7g0787 Mepo2g00746 Mesa13g04653 . Mtr4g0713 . . . . Pste6g02457 Pumo7g01043 Rops4g01252 Seca4g11074 Spst4g01647 Ssu4g2585 . Tpr4g0967 Trre7g00724 Tsu06g00671 . Vifa2g05104 . Viun10g01596 Vivi5g01065 .
Pvu10g0855 . . Adu02g02221 Aed2g0894 Aev02g2022 Ahy12g2333 Ahy2g2016 Aip02g02620 . . . Apr10g0906 Arst2g02877 Bach6g00829 . Bva02g01696 Car06g02815 Cca01g02093 . Dod07g1751 . . . . . Gso3g0216 Lal14g0872 . Lal19g0247 . Lan1g0751 . Lapu10g01477 Lasa7g00622 . . . . Lja3g1405 Mal7g0778 Mepo2g00739 Mesa13g04667 . Mtr4g0705 . Phco1g00974 . . Pste6g02454 Pumo7g01040 Rops4g01255 Seca4g11077 Spst4g01650 Ssu4g2590 . Tpr4g0965 Trre7g00721 Tsu06g00669 Vian9g00857 . . Viun10g01599 Vivi5g01071 .
Pvu10g0856 . . Adu02g02222 Aed2g0893 Aev02g2023 Ahy12g2334 Ahy2g2017 Aip02g02621 . . . Apr10g0907 Arst2g02878 Bach6g00828 . Bva02g01697 Car06g02816 Cca01g02094 . Dod07g1752 . . . . . Gso3g0215 Lal14g0873 . Lal19g0246 . Lan1g0752 . Lapu10g01478 Lasa7g00621 . . . . Lja3g1406 Mal7g0775 Mepo2g00738 Mesa13g04668 . Mtr4g0704 . Phco1g00972 . . Pste6g02452 Pumo7g01039 Rops4g01257 Seca4g11078 Spst4g01651 Ssu4g2591 . Tpr4g0964 Trre7g00720 Tsu06g00668 . Vifa2g05105 Vimu9g00607 Viun10g01600 Vivi5g01080 .
Pvu10g0857 . . Adu02g02228 Aed2g0891 Aev02g2025 Ahy12g2341 Ahy2g2023 Aip02g02626 . Amo12g2767 . Apr10g0910 Arst2g02884 . . Bva02g00851 . . . . . . . . . Gso3g0214 . . . . . . . . . . . . . . . . . . . . Prci12g1694 . . . . . . . Sto1g1713 . . . . . . . . .
Pvu10g0858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00965 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vifa Vifa2g05105 Chr2 1526947872 1526949194 +
Pvu Pvu10g0849 Chr10 30297209 30309179 +
Adu Adu02g02216 Chr02 86609174 86614061 +
Aed Aed2g0897 Chr2 6961737 6972820 -
Aev Aev02g2014 Chr02 21864281 21869723 +
Ahy Ahy12g2324 Chr12 110782583 110787772 +
Ahy Ahy2g2007 Chr2 94821772 94828472 +
Aip Aip02g02611 Chr02 100945257 100953178 +
Amo Amo12g2750 Chr12 113174802 113175828 +
Apr Apr10g0900 Chr10 21497917 21508559 +
Arst Arst2g02867 Chr2 86070566 86076119 +
Car Car06g02807 Chr06 40834739 40842687 +
Cca Cca01g02090 Chr01 48204360 48212151 +
Dod Dod07g1744 Chr07 46094709 46100266 +
Gma Gma01g01426 Chr01 48988945 49004721 -
Gso Gso3g0220 Chr3 3047407 3059894 -
Lal Lal14g0868 Chr14 11100733 11111180 +
Lapu Lapu10g01471 Chr10 24603056 24612884 +
Lja Lja3g1395 Chr3 14752896 14760939 +
Mal Mal7g0792 Chr7 20451946 20457872 -
Mepo Mepo2g00750 Chr2 9081354 9089283 -
Mesa Mesa13g04649 Chr13 73846045 73854843 +
Mtr Mtr4g0717 Chr4 8970707 8980036 -
Phco Phco1g00978 Chr1 10076493 10086458 -
Pste Pste6g02463 Chr6 12130065 12136255 -
Pumo Pumo7g01046 Chr7 19793093 19802113 -
Rops Rops4g01244 Chr4 33241932 33245667 -
Seca Seca4g11071 Chr4 249022256 249030646 +
Spst Spst4g01644 Chr4 56086210 56100755 +
Ssu Ssu4g2582 Chr4 65523901 65538620 -
Tpr Tpr4g0973 Chr4 9340921 9348671 -
Trre Trre7g00727 Chr7 4769501 4774902 -
Tsu Tsu06g00679 Chr06 5907261 5915021 -
Vifa Vifa2g05101 Chr2 1525892538 1525900047 +
Viun Viun10g01592 Chr10 30888227 30899175 +
Vivi Vivi5g01059 Chr5 25965663 25974061 +
Pvu Pvu10g0850 Chr10 30307164 30307867 +
Pvu Pvu10g0851 Chr10 30313677 30318230 +
Adu Adu02g02218 Chr02 86621937 86623973 +
Aev Aev02g2016 Chr02 21879942 21881762 +
Ahy Ahy12g2325 Chr12 110792344 110795442 +
Ahy Ahy2g2009 Chr2 94835738 94838727 +
Aip Aip02g02613 Chr02 100958933 100960750 +
Apr Apr10g0902 Chr10 21511329 21516109 -
Car Car06g02811 Chr06 40910511 40912867 +
Dod Dod07g1745 Chr07 46104360 46106180 +
Gma Gma07g00747 Chr07 7898329 7901966 +
Gma Gma01g01429 Chr01 49044680 49045807 -
Gso Gso1g1189 Chr1 47363347 47364503 -
Lan Lan1g0749 Chr1 17516526 17520618 +
Lja Lja3g1396 Chr3 14764229 14766241 +
Mal Mal7g0790 Chr7 20432548 20434572 -
Mesa Mesa13g04651 Chr13 73883461 73885245 +
Mtr Mtr4g0715 Chr4 8946695 8951802 -
Psa Psa7g5295 Chr7 460871958 460873742 -
Ssu Ssu4g2583 Chr4 65542972 65547475 +
Tpr Tpr4g0972 Chr4 9335687 9340067 -
Tsu Tsu06g00678 Chr06 5903259 5905145 -
Pvu Pvu10g0852 Chr10 30346383 30347169 -
Pvu Pvu10g0853 Chr10 30347440 30347652 -
Pvu Pvu10g0854 Chr10 30391109 30394641 +
Aed Aed2g0896 Chr2 6957826 6960989 -
Aev Aev02g2020 Chr02 21894723 21905251 +
Apr Apr10g0904 Chr10 21523089 21526243 +
Car Car06g02812 Chr06 40914150 40923145 +
Cca Cca01g02091 Chr01 48229044 48233007 +
Dod Dod07g1748 Chr07 46163898 46193638 +
Gso Gso3g0218 Chr3 3027905 3031965 -
Lal Lal14g0870 Chr14 11120287 11123552 +
Lapu Lapu10g01472 Chr10 24614759 24627261 +
Lja Lja3g1398 Chr3 14771396 14774990 +
Mal Mal7g0787 Chr7 20411233 20421355 -
Mepo Mepo2g00746 Chr2 9052687 9056656 -
Mesa Mesa13g04653 Chr13 73889164 73893715 +
Mtr Mtr4g0713 Chr4 8939707 8944241 -
Pste Pste6g02457 Chr6 12113679 12117315 -
Pumo Pumo7g01043 Chr7 19779101 19780887 -
Rops Rops4g01252 Chr4 33411807 33416171 +
Seca Seca4g11074 Chr4 249042394 249046283 +
Spst Spst4g01647 Chr4 56122119 56131173 +
Ssu Ssu4g2585 Chr4 65560061 65563251 +
Tpr Tpr4g0967 Chr4 9298352 9302399 -
Trre Trre7g00724 Chr7 4747704 4752022 -
Tsu Tsu06g00671 Chr06 5857020 5861154 -
Vifa Vifa2g05104 Chr2 1526190950 1526194525 +
Viun Viun10g01596 Chr10 30906294 30909647 +
Vivi Vivi5g01065 Chr5 26101295 26104839 -
Pvu Pvu10g0855 Chr10 30527090 30536502 +
Adu Adu02g02221 Chr02 86720338 86724741 +
Aed Aed2g0894 Chr2 6943930 6950068 -
Aev Aev02g2022 Chr02 21914199 21918213 +
Ahy Ahy12g2333 Chr12 110928516 110932967 +
Ahy Ahy2g2016 Chr2 94964916 94969306 +
Aip Aip02g02620 Chr02 101092758 101097176 +
Apr Apr10g0906 Chr10 21537549 21544351 +
Arst Arst2g02877 Chr2 86181931 86186279 +
Bach Bach6g00829 Chr6 6255118 6259118 -
Bva Bva02g01696 Chr02 19442098 19446088 +
Car Car06g02815 Chr06 41021167 41029541 +
Cca Cca01g02093 Chr01 48249637 48257491 +
Dod Dod07g1751 Chr07 46213490 46218809 +
Gso Gso3g0216 Chr3 3008907 3017132 -
Lal Lal14g0872 Chr14 11133824 11139535 +
Lal Lal19g0247 Chr19 2402097 2408570 -
Lan Lan1g0751 Chr1 17567091 17572822 +
Lapu Lapu10g01477 Chr10 24689764 24698411 +
Lasa Lasa7g00622 Chr7 27811408 27813919 -
Lja Lja3g1405 Chr3 14837604 14844034 +
Mal Mal7g0778 Chr7 20312285 20319018 -
Mepo Mepo2g00739 Chr2 8939310 8945484 -
Mesa Mesa13g04667 Chr13 74144965 74151532 +
Mtr Mtr4g0705 Chr4 8844765 8850923 -
Phco Phco1g00974 Chr1 10025512 10034343 -
Pste Pste6g02454 Chr6 12089055 12096527 -
Pumo Pumo7g01040 Chr7 19757973 19766051 -
Rops Rops4g01255 Chr4 33440187 33447019 +
Seca Seca4g11077 Chr4 249070957 249077570 +
Spst Spst4g01650 Chr4 56158054 56164408 +
Ssu Ssu4g2590 Chr4 65641123 65656652 +
Tpr Tpr4g0965 Chr4 9278163 9284680 -
Trre Trre7g00721 Chr7 4719358 4723827 -
Tsu Tsu06g00669 Chr06 5838762 5844141 -
Vian Vian9g00857 Chr9 13760788 13773278 +
Viun Viun10g01599 Chr10 30920486 30927280 +
Vivi Vivi5g01071 Chr5 26134497 26137493 -
Pvu Pvu10g0856 Chr10 30539512 30541938 +
Adu Adu02g02222 Chr02 86731846 86734268 +
Aed Aed2g0893 Chr2 6938979 6940295 -
Aev Aev02g2023 Chr02 21923024 21924343 +
Ahy Ahy12g2334 Chr12 110943021 110945469 +
Ahy Ahy2g2017 Chr2 94975879 94978327 +
Aip Aip02g02621 Chr02 101109928 101111851 +
Apr Apr10g0907 Chr10 21546922 21549347 +
Arst Arst2g02878 Chr2 86193434 86195778 +
Bach Bach6g00828 Chr6 6250299 6251594 -
Bva Bva02g01697 Chr02 19448737 19451475 +
Car Car06g02816 Chr06 41058500 41061054 +
Cca Cca01g02094 Chr01 48260648 48263185 +
Dod Dod07g1752 Chr07 46222231 46224776 +
Gso Gso3g0215 Chr3 3003065 3005536 -
Lal Lal14g0873 Chr14 11144000 11145322 +
Lal Lal19g0246 Chr19 2391619 2392935 -
Lan Lan1g0752 Chr1 17582359 17584763 +
Lapu Lapu10g01478 Chr10 24702561 24704951 +
Lasa Lasa7g00621 Chr7 27597744 27599066 -
Lja Lja3g1406 Chr3 14848490 14850733 +
Mal Mal7g0775 Chr7 20271058 20272380 -
Mepo Mepo2g00738 Chr2 8904401 8906670 -
Mesa Mesa13g04668 Chr13 74203933 74205255 +
Mtr Mtr4g0704 Chr4 8834666 8836790 -
Phco Phco1g00972 Chr1 10020205 10021503 -
Pste Pste6g02452 Chr6 12083635 12084951 -
Pumo Pumo7g01039 Chr7 19752039 19754391 -
Rops Rops4g01257 Chr4 33458069 33460354 +
Seca Seca4g11078 Chr4 249083590 249084906 +
Spst Spst4g01651 Chr4 56168292 56169608 +
Ssu Ssu4g2591 Chr4 65660263 65661579 +
Tpr Tpr4g0964 Chr4 9268897 9271520 -
Trre Trre7g00720 Chr7 4707013 4708335 -
Tsu Tsu06g00668 Chr06 5829853 5831977 -
Vifa Vifa2g05105 Chr2 1526947872 1526949194 +
Vimu Vimu9g00607 Chr9 7420972 7422270 +
Viun Viun10g01600 Chr10 30931019 30933452 +
Vivi Vivi5g01080 Chr5 26741929 26744358 +
Pvu Pvu10g0857 Chr10 30582013 30585042 +
Adu Adu02g02228 Chr02 86821407 86825216 -
Aed Aed2g0891 Chr2 6920740 6923461 +
Aev Aev02g2025 Chr02 21932920 21935672 -
Ahy Ahy12g2341 Chr12 111043310 111045686 -
Ahy Ahy2g2023 Chr2 95033022 95035488 -
Aip Aip02g02626 Chr02 101173383 101175635 -
Amo Amo12g2767 Chr12 113479437 113485151 +
Apr Apr10g0910 Chr10 21587265 21590374 -
Arst Arst2g02884 Chr2 86268331 86271103 -
Bva Bva02g00851 Chr02 12390523 12393312 +
Gso Gso3g0214 Chr3 2995305 2998709 +
Prci Prci12g1694 Chr12 34617132 34620072 -
Sto Sto1g1713 Chr1 25181456 25184837 +
Pvu Pvu10g0858 Chr10 30651000 30651365 -
Phco Phco1g00965 Chr1 9915894 9916367 +