Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01650 ATGGCCCAGGTGAGCAGAGTGCACAATCTTGCTCAAAGCACTCAAATTATTGGTCATTCTTCTAATCCCAACAAACCCAAATCTGTGAATTCGGTTTCGTTGAGGCCCAGGCTTTTGGGGGCCTCAAAATCTCGAACCTTGATGCATAAAAATGGAAGCTTTACGGGAAATTGCAATGTGGGTATGAGAAATTCCGGGGTGTTCAAGGTTTCTGCCTCTGTCACCGCCACAGAGAAGCCGTCGACGGCGCCGGAGATCGTGTTGGAACCCATCAAAGAAATCTCGGGTACCATCACATTGCCGGGGTCTAAGTCTCTGTCCAATCGAATTCTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTCGTAGACAACTTGCTGTATAGCGAGGATATTCATTACATGCTTGGTGCATTAAGGACCCTTGGATTGCGTGTAGAAGATGACAAAACAGCCAAACAAGCCATTGTGGAAGGCTGTGGGGGATTGTTTCCCACTGCTGGAGAATCTAAAGATGAAATCAATTTATTCCTTGGCAATGCTGGTACTGCAATGCGTCCTTTGACAGCAGCTGTTGTTGCTGCAGGTGGAAATGCAAGCTATGTACTTGATGGAGTGCCTCGAATGAGAGAGAGGCCAATTGGTGATTTGGTTGCTGGTCTGAAGCAGCTTGGTGCTGATGTTGACTGCTTTCTTGGCACAAACTGTCCGCCTGTTCGTGTAAATGGGAAAGGGGGACTTCCTGGTGGAAAGGTGAAACTGTCTGGATCAGTTAGCAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCTTTAGCTCTTGGGAACGTGGAAATTGAGATTGTTGATAAACTGATTTCTGTTCCATATGTTGATATGACTCTGAAATTGATGGAGCGCTTTGGAGTTTATGTGGAACACAGTGGTAATTGGGATAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCTGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTACTTCCTTGCTGGTGCAGCAGTCACTGGTGGGACGATGACTGTTGAGGGCTGTGGCACAAGTAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAGAACAGTGTCACTGTTACTGGACCACCACGAGATTCTTCTGGTCGAAAAGTCTTGCAAGCCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATTTGCTAATGGTCCCACTTCTATAAGAGATGTGGCGAGTTGGCGAGTTAAAGAGACAGAGAGGATGATAGCAATCTGCACTGAACTCAGAAAGCTAGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATTACTCCTCCTGAGAAATTGAATGTAACAGCTATAGACACATATGATGACCATAGAATGGCCATGGCATTCTCTCTTGCTGCTTGTGGAGATGTTCCAGTAACCATCAAGGATCCTGGTTGCACCAGAAAGACATTTCCTGACTACTTTGAAGTCCTTGAGAGGTTCACCAAGCACTAG 1578 0.4582 MAQVSRVHNLAQSTQIIGHSSNPNKPKSVNSVSLRPRLLGASKSRTLMHKNGSFTGNCNVGMRNSGVFKVSASVTATEKPSTAPEIVLEPIKEISGTITLPGSKSLSNRILLLAALSEGTTVVDNLLYSEDIHYMLGALRTLGLRVEDDKTAKQAIVEGCGGLFPTAGESKDEINLFLGNAGTAMRPLTAAVVAAGGNASYVLDGVPRMRERPIGDLVAGLKQLGADVDCFLGTNCPPVRVNGKGGLPGGKVKLSGSVSSQYLTALLMAAPLALGNVEIEIVDKLISVPYVDMTLKLMERFGVYVEHSGNWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTMTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQAIDVNMNKMPDVAMTLAVVALFANGPTSIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTAIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01650 525 ProSitePatterns EPSP synthase signature 2. 437 455 IPR023193 -
Spst4g01650 525 CDD EPSP_synthase 94 522 IPR006264 GO:0003866|GO:0009073
Spst4g01650 525 SUPERFAMILY EPT/RTPC-like 86 521 IPR013792 GO:0003824
Spst4g01650 525 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 525 IPR006264 GO:0003866|GO:0009073
Spst4g01650 525 MobiDBLite consensus disorder prediction 1 34 - -
Spst4g01650 525 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 519 IPR001986 GO:0016765
Spst4g01650 525 PANTHER AROM/DEHYDROQUINATE SYNTHASE 74 521 - -
Spst4g01650 525 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Spst4g01650 525 NCBIfam 3-phosphoshikimate 1-carboxyvinyltransferase 96 524 IPR006264 GO:0003866|GO:0009073
Spst4g01650 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 102 314 - -
Spst4g01650 525 Gene3D Enolpyruvate transferase domain 321 524 IPR036968 GO:0016765
Spst4g01650 525 Gene3D Enolpyruvate transferase domain 102 314 IPR036968 GO:0016765
Spst4g01650 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 319 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01650 Spst-Chr4 56158054 56164408 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01650 K00800 - gmx:100789268 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01650 4 56158054 56164408 Spst4g01650 4 56158054 56164408 ECH