Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00972 ATGTCACACATAGACAGTGCCCCTTCGACCCCAGGGAAGTTCAAGATGGAGAAAGCCTCGTACTTTAACCGCGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCCGTGTGGTCCTTCGTGTTTTTGGGCGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCATCGTCGCCGGTGCCGGCGGACCTATCCCGGAGGTCACTGAGGACCTACAACTGGGGCGGACCCGTCTGGGAGAAACGGGTCCGAGCCTCTGCCCGGGTCCGGTCCCGAAATGGGTTTGCCGTTTTGGTCACCGGGGCCGCTGGCTTTGTCGGCACCCATGTTTCTGCGGCGCTGAAACGCCGCGGAGATGGGGTTCTGGGAATTGACAATTTCAATGACTATTACGACCCTTCACTAAAACGTGCACGCCAGTTGCTTTTGGAGCGCACTGGAGTGTACATAGTGGAAGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTTTTTGAGGTTGTTCCTTTCACTCATGTTATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGTTTTGTGAATTTACTTGAGGTTTGTAAGAGTGTGAATCCACAACCTGCTATTGTGTGGGCATCTAGTAGCTCAGTTTATGGACTTAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCCACTAAGAAGGCGGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTCACTAGGGATATTTTGAAGGGGAAGGTGATACCTATATTTGAGGCTGCGAATCATGGCACCGTTGCAAGGGATTTTACTTATATTGATGATATTGTGAGGGGTTGTTTAGGGGCTCTGGATACGGCAGAAAAAAGCACAGGGAGTGGGGGGAAGAAGAGGGGGCCTGCACAGTTGAGGGTGTTCAATTTGGGTAATACTTCGCCTGTGCCGGTTAGTGATCTTGTGGGTATCTTGGAGAGGCTTCTGAAGCTTAAGGCAAAGAGGAACATAATGAAGTTGCCACGGAATGGTGATGTTCAGTTTACACATGCCAACATCAGCTACGCGCAGAGGGAGCTCGGGTATAAGCCAACCACAGATCTGCATAGTGGTTTGAAGAAATTTGTGCGGTGGTACCTGAATTACTACTCTGGTGGGAAGAAAGCTGTTGAGTGA 1299 0.5035 MSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFFRSPASSPVPADLSRRSLRTYNWGGPVWEKRVRASARVRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQLLLERTGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKVIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVGILERLLKLKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPTTDLHSGLKKFVRWYLNYYSGGKKAVE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00972 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 425 IPR036291 -
Phco1g00972 432 PRINTS Nucleotide sugar epimerase signature 346 361 - -
Phco1g00972 432 PRINTS Nucleotide sugar epimerase signature 386 403 - -
Phco1g00972 432 PRINTS Nucleotide sugar epimerase signature 121 137 - -
Phco1g00972 432 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Phco1g00972 432 Pfam NAD dependent epimerase/dehydratase family 95 332 IPR001509 -
Phco1g00972 432 Gene3D - 94 426 - -
Phco1g00972 432 PANTHER EPIMERASE-RELATED 77 425 - -
Phco1g00972 432 FunFam UDP-glucuronate 4-epimerase 3 94 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00972 Phco-Chr1 10020205 10021503 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00972 1 10020205 10021503 Phco1g00972 1 10020205 10021503 ECH