Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00678 ATGGTATTGACTGGTTTGATTGATAATGGCTTTGCTGCGAGTCGTCTTGTAGCGTTTTGTGCTTTATCTGAGTCGAAAGCACTTGATTATTGTACTAAGATATTGTATGGAATTAAAGAACCGAATGTGTTTTCTTGGAATGCGACAATTAGGGGGTATGTGGAGAGTGGAAATTTAGAAGGAGGTTTTATGTTGTATAAGAGAATGTTGCAAGGGGGTGTGTTGAAGCCGGATAATCATACTTACCCGTTGTTGCTTAAAGCTTGTTCTTGTCAAGCTTTAAGTTGTGTTGGTCTTGGTATACTTGGTCATGTGTTGAAGTTTGGGTTTGAATTGGATTTATTTGTGCACAATGCGTCAATTACTATGCTACTCTCATGTGGGGAGTTGAGTGTGGCGTatgatttgtttaataaaaGTCGTGTGAGAGATCTGGTAACATGGAATTCGATGATTACTGGATGTGTTAAAAGGGGACTGGTAAATGAGGCTATAAAAATCTATCGGGAaatggaggaagagagagtgAAACCTAATGAGATTACAATGATTGGGAtgatttcttcttgttctcagtTGCAGGATTTGAATCTTGGCAGAGAATTTCATCGTTACATCGAAGAACATGGCCTGGAGTTGACAATTCCACTCACTAATGCACTTATGGACATGTATGTGAAGTGTGGGGATTTGTTTCCTGCAAGAGTTCTATTTGATAACATGGGACAAAAGACCCTTGTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTCGGTTTCCTGGATGTTGCTCGggagattttatataaaattccAGAAAAGAATGTTGTGCCGTGGAATGCCATCATCAGTGGCTGTGTCCAGGCCAAGCATAGTAAAGAGGCATTGGCTCTATTCCATGAAATGCAAATTAGTAAAGTAGAACCCGATAATGTGACCATGGTAAACTGCCTTTCTGCATGCTCACAACTAGGAGCACTTGATGTTGGAATATGGATTCACCGTTATATTGAAAGACACAATATTTCTCTCAACGTTGCCTTAGGAACTGCACTAGTCGACATGTATGCCAAGTGCGGAAATATTTCAAGGGCACTCCAGGTTTTCGAAGAGATTCCTCAAAGAAACTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGAAATGCTCAAGATGCTATATCCTATTTCTCAAAAATGATTCATATTGGAATAGTGCCTGATGAGATCACCTTTCTTGGTGTGTTATCAGCTTGTTGTCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTTCGAAATGAGATCTAAATTCAATCTATCCCCCAAGCTTAAACACTATTCGTGCATGGTGGATCTTTTAGGAAGAGCTGGTCATTTGGAGGAGGCAGAAGAACTCATTAAGAATATGCCAATGCCGGCAGATGCTGCTGTGTTGGGTGCTTTGTTCTTTGCTTGCCGTGTTCATGGAAATGTTCTAATTGGAGAGAGGACGGCTTTTAAGCTTCTTGAGATTGATCCTCAAGATAGTGGAAACTATGTTCTACTCGCTAGCATGTATAGTGAAGCAAAAATGTGGAAGGAGGCAAGGAGTGCAAGGATAATAATGAAGGAGAGAGGAGTAGAGAAGACTCCTGGTTGCAGCTCAGTTGAGATCAATGGCATTGTGCATGAATTCATGGTGAGGGATTCCTCACATCCACAATCTGAATGGATTTATGAATGCCTGGTTTCTCTGACAAAACAACTGGAGCTTCTCGAGTTGACATGA 1785 0.3933 MVLTGLIDNGFAASRLVAFCALSESKALDYCTKILYGIKEPNVFSWNATIRGYVESGNLEGGFMLYKRMLQGGVLKPDNHTYPLLLKACSCQALSCVGLGILGHVLKFGFELDLFVHNASITMLLSCGELSVAYDLFNKSRVRDLVTWNSMITGCVKRGLVNEAIKIYREMEEERVKPNEITMIGMISSCSQLQDLNLGREFHRYIEEHGLELTIPLTNALMDMYVKCGDLFPARVLFDNMGQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKNVVPWNAIISGCVQAKHSKEALALFHEMQISKVEPDNVTMVNCLSACSQLGALDVGIWIHRYIERHNISLNVALGTALVDMYAKCGNISRALQVFEEIPQRNCLTWTAIICGLALHGNAQDAISYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFFEMRSKFNLSPKLKHYSCMVDLLGRAGHLEEAEELIKNMPMPADAAVLGALFFACRVHGNVLIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARIIMKERGVEKTPGCSSVEINGIVHEFMVRDSSHPQSEWIYECLVSLTKQLELLELT 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00678 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Tsu06g00678 594 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 590 - -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 452 475 IPR002885 -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 280 311 IPR002885 -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 415 445 IPR002885 -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Tsu06g00678 594 TIGRFAM PPR: pentatricopeptide repeat domain 44 75 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat 351 378 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat 219 243 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat 380 409 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat 415 442 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat 451 475 IPR002885 -
Tsu06g00678 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Tsu06g00678 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Tsu06g00678 594 PANTHER OS10G0400250 PROTEIN 1 590 - -
Tsu06g00678 594 Pfam E+ motif 561 587 IPR046849 -
Tsu06g00678 594 Gene3D Tetratricopeptide repeat domain 98 198 IPR011990 GO:0005515
Tsu06g00678 594 Gene3D Tetratricopeptide repeat domain 7 96 IPR011990 GO:0005515
Tsu06g00678 594 Gene3D Tetratricopeptide repeat domain 200 331 IPR011990 GO:0005515
Tsu06g00678 594 Pfam PPR repeat family 275 322 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat family 41 89 IPR002885 -
Tsu06g00678 594 Pfam PPR repeat family 144 190 IPR002885 -
Tsu06g00678 594 Gene3D Tetratricopeptide repeat domain 379 587 IPR011990 GO:0005515
Tsu06g00678 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 442 IPR002885 -
Tsu06g00678 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Tsu06g00678 594 Pfam E motif 494 556 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00678 Tsu-Chr6 5903259 5905145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00678 33 589 Glycoside Hydrolase AT3G49170 30.071 1.83e-83 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00678 - - mtr:MTR_4g024860 1070.07