Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02613 ATGACCTTAACAGGCTTAATAGACAATAGCTTTGCTGCAAGTCGCCTTGTTGCTTTCTGCGCTCTCTCAGAATCTCAAACACTTGGATATTGCACAAAAATTTTATATCATACAAACGAACCAAATGTCTTTTCTTGGAATACGACAATTAGGGGATATATCGAAAGTGGAGACTTAGATGGAGCTCTTGTTTTGTACAAGAAAATGTTGCAGTATGATGGGTTGAAGCCAGATAATCATACTTACCCATTATTGCTTAAAGCATGTTCTTCTCCTTCTCTAAATTGTGTAGGTCATACTATACTTGGACATGTATTAAAGTTTGGTTTTGAATTTGACTTATTTGTGCACAATGGATTGATCTCTATGCTACTGTCCTATGGGGACTTAGAGGCAGCATATGATGTGTTCAATAGAGGATGTGCGAGGGACCTGGTAACTTGGAATGCTATGATCACGGGATGTGTTAGAAGAGGACTGGAGATTGAGGCTATAAAACTTTATCGGGAAATGGAGGCTGAGAAGGTGAAACCAAATGAGATTACAATGATTGGGTTGGTTTCTTCTTGTTCTCGGTTACATGATTTGAATCTTGGCAGAGAATTTCATTGTTACATCGAAGAACATAAGCTTGAGTTGACAGTTCCACTTATTAATGCACTTATGGACATGTATGTGAAGTGTGGAGACCTATTGGCTGCACAAGTTTTATTTGATAACATGGCACAGAAGACCATTGTTTCATGGACTACAATGGTTCTTGGATATGCCAGATTCGGTTACCTTGATATTGCTAGGAAAATTTTATATAAAGTTCCAGAGAAGAGTGTTGTTCCTTGGAATGCAATCATCAGTGGCTGTGTTCAATCCAAGCATAGTAAGGAGGCATTGACTTTATTCCATGAAATGCAAATTAATAATATAGAGCCTGATAAAGTGACCATGATTAACTGCTTGTGTGCATGTTCACAACTAGGAGCACTTGATGTTGGAGTATGGATTCACCATTATATTGAAAGAAAAAATCTTTCTGTAGACGTCACCTTGGGAACTGCTCTAGTTGACATGTATGCCAAGTGCGGAAATATTGACAAGGCTCTCCAAGTTTTTCAAGAGCTTCCTCAAAGAAATTGTTTGACATGGACAGCCATTATTTGCGGTTTAGCATTTAATGGGAATTCCTGTGATGCTATATACTATTTCTCAGAAATGATTCGTGTTGGATTGATGCCTGATGAGATCACCTTTCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGCGCCAAATTCAATATATTCCCTAAGCTTAAACACTACTCTTGCATGGTGGATCTTCTAGGAAGGGCTGGTCATCTGGAGGATGCTGAAGAGCTTATCCAAAATATGCCTATGGAAGCGGATGCTGCGGTATGGGGTGCTTTATTCTTTGCTTGTCGTGTTCATGGCAATGTTCAGATTGGGAAGAGGGCAGCTATGAAGCTCCTTGAGATGGATCCTCAAGATAGTGGGAATTATGTTCTCCTTGCTAGCATGTACAGTGAAGCGAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAACTAATGAAGGAAAGAGGGGTAGATAAGCTTCCTGGTTGCAGCTCCATTGAGATCAATGGCATTGTTCATGAGTTTGTGGTAAAGGATGCATTACATCCACAGTCTGAAATGATTTATGAAAGCCTGATTTCTTTGACAAAGCAACTGGAGCTTGAAGTTACATCCGCAGTTCCAGCTTCTAGAGATAATCTTTCCTTCTAA 1818 0.3977 MTLTGLIDNSFAASRLVAFCALSESQTLGYCTKILYHTNEPNVFSWNTTIRGYIESGDLDGALVLYKKMLQYDGLKPDNHTYPLLLKACSSPSLNCVGHTILGHVLKFGFEFDLFVHNGLISMLLSYGDLEAAYDVFNRGCARDLVTWNAMITGCVRRGLEIEAIKLYREMEAEKVKPNEITMIGLVSSCSRLHDLNLGREFHCYIEEHKLELTVPLINALMDMYVKCGDLLAAQVLFDNMAQKTIVSWTTMVLGYARFGYLDIARKILYKVPEKSVVPWNAIISGCVQSKHSKEALTLFHEMQINNIEPDKVTMINCLCACSQLGALDVGVWIHHYIERKNLSVDVTLGTALVDMYAKCGNIDKALQVFQELPQRNCLTWTAIICGLAFNGNSCDAIYYFSEMIRVGLMPDEITFLGVLSACCHGGLVEEGRKYFSQMSAKFNIFPKLKHYSCMVDLLGRAGHLEDAEELIQNMPMEADAAVWGALFFACRVHGNVQIGKRAAMKLLEMDPQDSGNYVLLASMYSEAKMWKEARSARKLMKERGVDKLPGCSSIEINGIVHEFVVKDALHPQSEMIYESLISLTKQLELEVTSAVPASRDNLSF 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02613 605 PANTHER OS10G0400250 PROTEIN 1 592 - -
Aip02g02613 605 Gene3D Tetratricopeptide repeat domain 380 541 IPR011990 GO:0005515
Aip02g02613 605 Pfam PPR repeat family 144 190 IPR002885 -
Aip02g02613 605 Pfam PPR repeat family 41 90 IPR002885 -
Aip02g02613 605 Pfam PPR repeat family 377 425 IPR002885 -
Aip02g02613 605 Pfam PPR repeat family 275 320 IPR002885 -
Aip02g02613 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 592 - -
Aip02g02613 605 Pfam PPR repeat 219 244 IPR002885 -
Aip02g02613 605 Pfam PPR repeat 451 476 IPR002885 -
Aip02g02613 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 415 442 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 280 311 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 351 378 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 44 78 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Aip02g02613 605 TIGRFAM PPR: pentatricopeptide repeat domain 452 477 IPR002885 -
Aip02g02613 605 Pfam E motif 494 556 IPR046848 -
Aip02g02613 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Aip02g02613 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 77 IPR002885 -
Aip02g02613 605 Gene3D Tetratricopeptide repeat domain 6 95 IPR011990 GO:0005515
Aip02g02613 605 Gene3D Tetratricopeptide repeat domain 200 330 IPR011990 GO:0005515
Aip02g02613 605 Gene3D Tetratricopeptide repeat domain 99 198 IPR011990 GO:0005515
Aip02g02613 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02613 Aip-Chr2 100958933 100960750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02613 33 589 Glycoside Hydrolase AT3G49170 30.961 1.35e-89 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02613 - - adu:110273047 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02613 02 100958933 100960750 Aip02g02613 02 100958933 100960750 ECH