Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11078 ATGTCTCAGCTGAAGCAAATGTCGCACACTGACAGTGCCCCTTCGACGCCTGGGAAGTTCAAGATGGAGAAAGCCTCCTACTTCAACCGCGTCCGGTGGCACGCTTCGCCGGCGAAGCTCGTCCTCTGGTCCTTCGTCTTCTCTGCGGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCGTCTTCTCCTCTTCCGGCGGACCCTTCTCGCCGTTCCCTGAGGACCTCAAACTGGGGCGGTCCGGTTTGGGAGAAACGGGTCCGATCCTCTGCCCGGGTCCGGTCCAGAAACGGGTTCTCCGTTCTGGTCACCGGAGCCGCCGGTTTCGTCGGGACCCACGTCTCCGCCGCCCTGAAACGCCGTGGCGATGGGGTGCTTGGACTCGACAATTTCAATGACTATTATGACCCTTCTCTGAAGCGTGCACGCCAAGCCCTTTTGGAACGCACTGGGGTGTACATTGTGGAAGGGGACATCAATGATGCTGCACTTTTGAGGAAGCTCTTTGAGGTTGTGCCTTTCACTCACGTGATGCATTTGGCTGCTCAGGCTGGTGTGAGGTATGCTATGGAGAATCCTGGTTCTTATGTGCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAGGTTTGTAAAACTGTGAACCCTCAACCTGCTATTGTGTGGGCTTCTTCTAGCTCAGTTTATGGATTGAATACTAAGGTTCCCTTTTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCTACTAAGAAGGCTGGTGAAGAGATTGCTCATACTTATAATCATATATATGGCCTTTCCTTGACCGGATTGCGGTTCTTCACTGTTTATGGTCCTTGGGGTAGGCCTGATATGGCCTACTTCTTCTTCACTAGAGATATTTTGAAGGGGAAAGCCATCCCTATCTTTGAGGCACCAAATCATGGCACGGTTGCTAGGGATTTCACTTACATTGATGATATTGTGAGGGGCTGCTTGGGTGCTTTGGATACTGCAGAGAAGAGTACTGGCAGTGGCGGGAAGAAGAGGGGACCGGCGCAGTTGAGGGTGTTCAATTTGGGGAATACTTCACCTGTCCCTGTCAGTGAGCTTGTGAGCATTTTGGAGAGGCTGTTGAAGGTTAAGGCAAAGAGGAACATCATGAAGTTGCCGCGAAATGGGGATGTGCAGTTTACTCATGCGAACATCAGCTACGCGCAGAGAGAGCTTGGGTATAAGCCTGTGACAGATCTGCAGACTGGTCTGAAGAAATTCGTGAGGTGGTACCTGAATTACTATTCTGGTGGGAAGAAAGCTGTTGAGTGA 1317 0.5118 MSQLKQMSHTDSAPSTPGKFKMEKASYFNRVRWHASPAKLVLWSFVFSAAILIFFFRSPASSPLPADPSRRSLRTSNWGGPVWEKRVRSSARVRSRNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERTGVYIVEGDINDAALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKTVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAIPIFEAPNHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSELVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPVTDLQTGLKKFVRWYLNYYSGGKKAVE. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11078 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 431 IPR036291 -
Seca4g11078 438 PANTHER EPIMERASE-RELATED 83 431 - -
Seca4g11078 438 Gene3D - 100 432 - -
Seca4g11078 438 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
Seca4g11078 438 FunFam UDP-glucuronate 4-epimerase 3 100 431 - -
Seca4g11078 438 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Seca4g11078 438 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Seca4g11078 438 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Seca4g11078 438 PRINTS Nucleotide sugar epimerase signature 352 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11078 Seca-Chr4 249083590 249084906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11078 4 436 Miscellaneous Gene Families AT4G00110 87.991 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11078 K08679 - gmx:100788739 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11078 4 249083590 249084906 Seca4g11078 4 249083590 249084906 ECH