Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0246 ATGTCTCAGCTGAAACAAATCTCTCATAACGATAATAGCGCCCCTTCAACCCCAGGGAAGTTCAAGATGGAGAAATCCCCTTACTTCAACCGCACACGGTGGCACTATTCCCTCGCCAAGTTAACCCTTTGGTCCTTCGCTTTCTTGGTCGTGATCTTGATCTTTTTCCTCCGATCTCCAACCTCATCGGTTCCCATCGACCCCTCTCGCCGCTCGTTGCGTACTTACAATTGGGGCGGATCCGCTTGGGAGAAGCGGGTCCGCTCCTCTGCTCGCGTCCGGTCACGAAACGGGATGACCGTTCTCGTGACCGGGGCAGCTGGTTTTGTTGGGACCCACGTGTCCTCGGCGCTTAAACGCCGAGGAGACGGGGTCCTAGGAGTTGATAACTTCAATGACTATTATGAAATTTCATTGAAACGTGCGCGCCAAGCTTTATTGGAGCGCACTGGGGTTTACATTGTGGAAGGTGATATCAATGATGAAGCACTTTTGAGGAAATTGTTTGAAGTTGTTCCATTCACTCATGTTATGCATTTGGCTGCTCAAGCTGGTGTGAGGTATGCTATGCAAAATCCTGGCTCTTATGTGCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAAGTTTGTAAGAGTGTGAATCCACAACCTGCAATTGTTTGGGCTTCTAGTAGTTCTGTTTATGGGCTTAATACTAAGGTGCCGTTTTCGGAGAGGGATCGGACTGATCAACCGGCTAGTTTGTATGCTGCTACAAAGAAAGCTGGTGAAGAGATTGCTCATACATATAATCATATATATGGTCTTTCGCTGACAGGGTTGCGGTTCTTTACTGTTTATGGACCTTGGGGTAGGCCTGATATGGCATACTTCTTTTTCACTAAGGATATTTTGAAGGGGAAGCCGATCCCGGTTTTTGAGGCGGCGAATCATGGTACGGTTGCGAGGGATTTTACTTACATTGATGATATTGTGAGGGGGTGTTTGGGTGCGTTGGATACTGCGGAGAAGAGTACTGGTAGTGGTGGGAAGAAGAAGGGTCCAGCACAGTTGAGGGTTTTCAATTTAGGGAATACTTCACCCGTGCCTGTTACTGAGCTTGTGAGCATTTTGGAGAGGCTTTTGAAGGTTAAGGCAAAGAGGAATATAATGAAGTTGCCGCGGAATGGGGATGTGCAGTTTACTCATGCAAACATTAGCTACGCGAAGAGAGAGCTTGGATATAAACCTACAACAGATCTACAAACTGGTTTGAAAAAATTCGTTCGGTGGTATCTGAATTACTATTCCGGGGGGAAGAAAGCTGTTGAGTGA 1317 0.467 MSQLKQISHNDNSAPSTPGKFKMEKSPYFNRTRWHYSLAKLTLWSFAFLVVILIFFLRSPTSSVPIDPSRRSLRTYNWGGSAWEKRVRSSARVRSRNGMTVLVTGAAGFVGTHVSSALKRRGDGVLGVDNFNDYYEISLKRARQALLERTGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMQNPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKPIPVFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVTELVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAKRELGYKPTTDLQTGLKKFVRWYLNYYSGGKKAVE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0246 438 MobiDBLite consensus disorder prediction 1 19 - -
Lal19g0246 438 Gene3D - 97 432 - -
Lal19g0246 438 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Lal19g0246 438 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Lal19g0246 438 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Lal19g0246 438 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Lal19g0246 438 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 12 436 - -
Lal19g0246 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 96 431 IPR036291 -
Lal19g0246 438 PANTHER EPIMERASE-RELATED 12 436 - -
Lal19g0246 438 MobiDBLite consensus disorder prediction 1 22 - -
Lal19g0246 438 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0246 Lal-Chr19 2391619 2392935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0246 4 436 Miscellaneous Gene Families AT4G00110 85.681 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0246 K08679 - gmx:100790218 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0873 14 11144000 11145322 Lal19g0246 19 2391619 2392935 LSH