Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2333 ATGGCCCAAGTGACCAGAATCCACAATGGTCCTCAAAACACACAGATTCTTCTTCGCCATACTCACAATTCCCACATACCCAAATCAGCAAACTCAGTTTCATTGAAGTCACAACTTTGGGGCACCTCAAAATCTGTGAGCTTGAATCACAAAAATGGTGTCTTTTTGGGAAATTTTGAGGTGGGTAGGTGCAATAATAATGTGGTTAGGGTTTCTGCATCTGTTGCCGCTACAGAGAAGCCTTCGACGGCGCCGGAGATCGTTCTGGAACCTATCAAAGAAATCTCCGGAACCATCACATTGCCTGGCTCGAAGTCTCTGTCCAATCGAATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTGGACAACTTGTTGAATAGCGAGGATGTTCATTACATGCTCGGTGCATTAAGGACCCTTGGACTACGAGTGGAAGATGACAAAAATGCCAAACAAGCAATCGTGGAAGGCTGTGGGGGGTTGTTTCCCACTGGTCGAGAGTCTAAAGAGGAAGTTACTTTATTCCTTGGAAATGCTGGTACTGCAATGCGTCCTTTGACAGCAGCTGTGACTGCTGCAGGTGGAAACACAAGCTATGTACTTGATGGGGTGCCCCGAATGAGAGAGAGGCCTATTGGAGATTTGGTGGCTGGTCTCAAGCAGCTTGGTGCAGATGTTGATTGTTCCCTTGGCACAAACTGTCCACCTGTTCGTGTAGTTGGGAAGGGAGGACTTCCTGGGGGAAAGGTGAAGTTGTCTGGATCAATTAGCAGTCAATACTTGACTGCATTGCTCATGGCAGCTCCTTTGGCCCTTGGTGATGTTGAAATTGAGATTATCGATAAACTGATTTCTGTTCCCTACGTTGATATGACTTTGAAACTGATGGAGCGCTTTGGAGTCCATGTGGAGCACAGCGGTAACTGGGATAGGTTCTTGGTCCACGGAGGTCAAAAGTACAAGTCTCCTGGGAATGCTTTTGTTGAAGGCGATGCTTCTAGTGCCAGCTACTTCCTTGCAGGTGCAGCTGTTACCGGTGGGACTATCACAGTTGTAGGCTGCGGCACAAGTAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTCGAAAAGATGGGAGCTAAAGTTACATGGACAGAGAACAGTGTCACCGTTACTGGCCCACCACGAGATCCTTCAGGCCGAAAAGTCTTGCAAGGCGTTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACTCTTGCTGTTGTTGCGCTATTTGCTAATGGCCCCACTGCCATAAGAGATGTGGCTAGTTGGAGAGTTAAGGAGACAGAGAGAATGATAGCAATTTGCACAGAACTTAGGAAGCTAGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATAACGCCACCCGAGAAATTGAACATCACGGCGATCGACACGTACGATGACCACAGAATGGCCATGGCATTTTCTCTTGCTGCGTGTGGCGATGTTCCGGTAACCATCAATGATCCTGGTTGCACCCGGAAAACATTCCCTGATTACTTTGAAGTTCTTGCAAAGTACACCAAGCAATAA 1581 0.4706 MAQVTRIHNGPQNTQILLRHTHNSHIPKSANSVSLKSQLWGTSKSVSLNHKNGVFLGNFEVGRCNNNVVRVSASVAATEKPSTAPEIVLEPIKEISGTITLPGSKSLSNRILLLAALSEGTTVVDNLLNSEDVHYMLGALRTLGLRVEDDKNAKQAIVEGCGGLFPTGRESKEEVTLFLGNAGTAMRPLTAAVTAAGGNTSYVLDGVPRMRERPIGDLVAGLKQLGADVDCSLGTNCPPVRVVGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVDMTLKLMERFGVHVEHSGNWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVVGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPSGRKVLQGVDVNMNKMPDVAMTLAVVALFANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNITAIDTYDDHRMAMAFSLAACGDVPVTINDPGCTRKTFPDYFEVLAKYTKQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2333 526 PANTHER 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE, CHLOROPLASTIC 2 525 - -
Ahy12g2333 526 SUPERFAMILY EPT/RTPC-like 87 522 IPR013792 GO:0003824
Ahy12g2333 526 ProSitePatterns EPSP synthase signature 1. 177 191 IPR023193 -
Ahy12g2333 526 CDD EPSP_synthase 95 522 IPR006264 GO:0003866|GO:0009073
Ahy12g2333 526 Gene3D Enolpyruvate transferase domain 321 523 IPR036968 GO:0016765
Ahy12g2333 526 Gene3D Enolpyruvate transferase domain 103 315 IPR036968 GO:0016765
Ahy12g2333 526 TIGRFAM aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 97 525 IPR006264 GO:0003866|GO:0009073
Ahy12g2333 526 PANTHER AROM/DEHYDROQUINATE SYNTHASE 2 525 - -
Ahy12g2333 526 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 93 526 IPR006264 GO:0003866|GO:0009073
Ahy12g2333 526 ProSitePatterns EPSP synthase signature 2. 438 456 IPR023193 -
Ahy12g2333 526 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 90 520 IPR001986 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2333 Ahy-Chr12 110928516 110932967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2333 K00800 - gmx:100789268 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2333 12 110928516 110932967 Ahy2g2016 2 94964916 94969306 hybridization