Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01080 ATGTCTCAGCTGAAGCAAATGTCGCACGCCGACAACAGTGCTCCGTCGACGCCGGGGAAGTTCAAGATGGAGAAAGCTTCTTACTTCAACCGTGTACGGTGGCACACTTCTCCGGCGAAGCTTGCTCTTTGGACCTTTGTTTTCTCAGCTGCAATCTTGATCTTCTTTTTCCGATCTCCGGCGACATCTTCTATTCCGGCGGATCCCTCTCGGCGGTCTCTGAGAAGTCCTTCCAACTGGGGTGGTCCGGTTTGGGAGAAACGCGTCCGTTCCTCCGCGAGGGTCCGGTCCAGAAACGGGTTCTCCGTTCTTGTGACCGGAGCCGCTGGTTTCGTCGGAACACATGTCTCCGCGGCGCTGAAGCGCCGCGGAGACGGTGTTCTGGGGATTGATAACTTCAATGACTATTATGACCCTTCTTTGAAGCGTGCAAGGCAAGCTCTTTTGGAGAGAACCGGTGTTTACATTGTGGAAGGTGATATCAATGATGCTGCTTTGTTAAGGAAGCTTTTTGAGGTTGTTCCTTTTACTCATGTCATGCATTTGGCTGCTCAAGCTGGTGTGAGGTATGCTATGGAGAATCCTGGTTCTTATGTTCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAAGTTTGTAAAACTGTTAACCCTCAACCTTCAATTGTTTGGGCTAGTTCTAGTTCTGTTTATGGATTGAATACTAAGGTGCCTTTTTCTGAGAAGGATAGAACAGATCAACCTGCTAGTTTGTATGCTGCTACTAAGAAAGCCGGCGAAGAAATCGCGCATACTTATAATCATATATACGGTCTTTCGTTAACCGGATTGCGGTTTTTCACTGTTTACGGTCCTTGGGGTAGACCTGATATGGCTTACTTCTTTTTCACTAGAGATATTTTGAAGGGGAAGACAATTTCCATTTTCGAGGGAGCGAATCATGGGACTGTTGCAAGGGATTTTACTTATATAGATGATATCGTGAGAGGGTGTTTAGGTGCTTTGGATACTGCCGAGAAGAGTACCGGAAGTGGCGGGAAGAAGAGGGCGCCGGCTCAGTTGAGGGTTTTCAATTTGGGGAATACTTCGCCCGTTCCTGTTTCCGATCTCGTGAGTATTTTGGAGAGGCTGTTGAAGACTAAGGCGAAGAGGAATATTATGAAGTTGCCGAGGAACGGGGACGTCCAGTTTACTCATGCGAATATTAGCTACGCGCAGGGAGAGCTCGGTTATAAGCCGGTGACAGATCTTCAGACCGGTTTGAAGAAATTCGTGAGGTGGTACATGAATTACTATTCCGGTGGGAAGAAAGCCGTCGAGTGA 1323 0.4754 MSQLKQMSHADNSAPSTPGKFKMEKASYFNRVRWHTSPAKLALWTFVFSAAILIFFFRSPATSSIPADPSRRSLRSPSNWGGPVWEKRVRSSARVRSRNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQALLERTGVYIVEGDINDAALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKTVNPQPSIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKTISIFEGANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRAPAQLRVFNLGNTSPVPVSDLVSILERLLKTKAKRNIMKLPRNGDVQFTHANISYAQGELGYKPVTDLQTGLKKFVRWYMNYYSGGKKAVE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01080 440 PRINTS Nucleotide sugar epimerase signature 319 334 - -
Vivi5g01080 440 PRINTS Nucleotide sugar epimerase signature 354 369 - -
Vivi5g01080 440 PRINTS Nucleotide sugar epimerase signature 394 411 - -
Vivi5g01080 440 PRINTS Nucleotide sugar epimerase signature 129 145 - -
Vivi5g01080 440 FunFam UDP-glucuronate 4-epimerase 3 102 433 - -
Vivi5g01080 440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 99 433 IPR036291 -
Vivi5g01080 440 Gene3D - 102 434 - -
Vivi5g01080 440 PANTHER EPIMERASE-RELATED 85 433 - -
Vivi5g01080 440 Pfam NAD dependent epimerase/dehydratase family 103 340 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01080 Vivi-Chr5 26741929 26744358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01080 4 438 Miscellaneous Gene Families AT4G00110 86.667 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01080 K08679 - gmx:100790218 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01080 5 26741929 26744358 Vivi5g01080 5 26741929 26744358 ECH